RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RNF34Q969K3 372 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 HAUS1Q96CS2 278 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 OSBPL8Q9BZF1 889 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 SLITRK6Q9H5Y7 841 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 PCDH18Q9HCL0 1135 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 DNMT3LQ9UJW3 386 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 R3HDM2Q9Y2K5 976 aaKnown RBP11.16□□□□□ -0.62
TDP1-211ENST00000555178 USP15Q9Y4E8 981 aaPredicted RBP11.16□□□□□ -0.62
TDP1-211ENST00000555178 CLUHO75153 1309 aa11.16□□□□□ -0.62
TDP1-211ENST00000555178 hCG_1818297A0A087WSY0 165 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 PAGE1O75459 146 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 POU2F2P09086 479 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 DESP17661 470 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 SLC6A4P31645 630 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 L1CAMP32004 1257 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 ADRA1BP35368 520 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 NUMBP49757 651 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 SGSHP51688 502 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 VCPP55072 806 aaKnown RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 KRT81Q14533 505 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 SIX1Q15475 284 aaPredicted RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 SKIV2LQ15477 1246 aaKnown RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 TRIP4Q15650 581 aaPredicted RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 FAM78AQ5JUQ0 283 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 ARID3BQ8IVW6 561 aaPredicted RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 SPATA4Q8NEY3 305 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 TEKT4Q8WW24 435 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 ATG4AQ8WYN0 398 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 RPP25Q9BUL9 199 aaKnown RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 TRIM62Q9BVG3 475 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 PLA2G2FQ9BZM2 168 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 NACA2Q9H009 215 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 SIK2Q9H0K1 926 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 TASP1Q9H6P5 420 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 WDCPQ9H6R7 721 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 DDX56Q9NY93 547 aaKnown RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 RRN3Q9NYV6 651 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 SAE1Q9UBE0 346 aaPredicted RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 TLR6Q9Y2C9 796 aa11.15□□□□□ -0.62
TDP1-211ENST00000555178 NYNRINQ9P2P1 1898 aaKnown RBP11.15□□□□□ -0.62
TDP1-211ENST00000555178 SLU7O95391 586 aaKnown RBP11.15□□□□□ -0.63
TDP1-211ENST00000555178 GOT1P17174 413 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 TUBP50607 506 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 DPYSL2Q16555 572 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 BOLA3Q53S33 107 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 ODF2Q5BJF6 829 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 RFWD3Q6PCD5 774 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 DENND1CQ8IV53 801 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 RCOR2Q8IZ40 523 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 ZNF276Q8N554 614 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 ZSCAN18Q8TBC5 510 aaPredicted RBP11.15□□□□□ -0.63
TDP1-211ENST00000555178 TSC1Q92574 1164 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 RBM41Q96IZ5 413 aaKnown RBP11.15□□□□□ -0.63
TDP1-211ENST00000555178 SERPINB11Q96P15 392 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 EPC1Q9H2F5 836 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 UBE2ZQ9H832 354 aaPredicted RBP11.15□□□□□ -0.63
TDP1-211ENST00000555178 ETNK2Q9NVF9 386 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 ARHGEF38Q9NXL2 777 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 CFAP97Q9P2B7 532 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 DPP7Q9UHL4 492 aa11.15□□□□□ -0.63
TDP1-211ENST00000555178 COL4A3Q01955 1670 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 TRAV19A0A0A6YYK7 116 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 LEFTY2O00292 366 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 KRIT1O00522 736 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 CREB3O43889 395 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 MAP3K6O95382 1288 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 HOXB8P17481 243 aaPredicted RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 FCARP24071 287 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 PAFAH1B1P43034 410 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 PPP3CCP48454 512 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 KLF1Q13351 362 aaPredicted RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 TFDP3Q5H9I0 405 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 GPR153Q6NV75 609 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 CIR1Q86X95 450 aaPredicted RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 TP53INP2Q8IXH6 220 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 CCDC33Q8N5R6 958 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 MNS1Q8NEH6 495 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 SH3RF2Q8TEC5 729 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 LRRN4Q8WUT4 740 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 SUSD6Q92537 303 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 DDX47Q9H0S4 455 aaKnown RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 LINC00597Q9H2U6 94 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 CWC15Q9P013 229 aaKnown RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 AGO1Q9UL18 857 aaKnown RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 TTC7AQ9ULT0 858 aaPredicted RBP11.14□□□□□ -0.63
TDP1-211ENST00000555178 NEU3Q9UQ49 428 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 HS3ST4Q9Y661 456 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 A0A0C4DFX4 3053 aa11.14□□□□□ -0.63
TDP1-211ENST00000555178 CTAGE15A4D2H0 777 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 F9P00740 461 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CTAGE8P0CG41 777 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CORO1AP31146 461 aaKnown RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 CCR1P32246 355 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 GBP1P32455 592 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 SLC7A9P82251 487 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CKAP4Q07065 602 aaKnown RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 TUBB2AQ13885 445 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 TAZQ16635 292 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 FAM133BQ5BKY9 247 aaKnown RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 MS4A13Q5J8X5 152 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms