RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 VEGFBP49765 207 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 USP4Q13107 963 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 METTL23Q86XA0 190 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 AGGF1Q8N302 714 aaeCLIP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 GPR152Q8TDT2 470 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ZNF296Q8WUU4 475 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 PGLYRP2Q96PD5 576 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NPY6RQ99463 290 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 TMEM120BA0PK00 339 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 CFAP73A6NFT4 308 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 METTL18O95568 372 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 PCSK1P29120 753 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ARL4AP40617 200 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 GRIA1P42261 906 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ARL4CP56559 192 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 LAMB3Q13751 1172 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ITIH4Q14624 930 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 GALNTL6Q49A17 601 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NUGGCQ68CJ6 796 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 C3orf62Q6ZUJ4 267 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ZNF598Q86UK7 904 aaKnown RBP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 MFN1Q8IWA4 741 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 PGBD4Q96DM1 585 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 SMARCD1Q96GM5 515 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 TMEM109Q9BVC6 243 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 HMX1Q9NP08 348 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ARHGEF4Q9NR80 690 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 FGFR1OP2Q9NVK5 253 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 PTCH2Q9Y6C5 1203 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 CASP8AP2Q9UKL3 1982 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 HHLA1C9JL84 531 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ALOX15BO15296 676 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ELK3P41970 407 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ROR2Q01974 943 aaKnown RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 GLB1LQ6UWU2 654 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 STRADAQ7RTN6 431 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 SCN4BQ8IWT1 228 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 CCNYQ8ND76 341 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 RNF139Q8WU17 664 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 DEPDC1BQ8WUY9 529 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 CENPTQ96BT3 561 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 CFAP36Q96G28 342 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 NAF1Q96HR8 494 aaKnown RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 SERPINB12Q96P63 405 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 TSC22D3Q99576 134 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ROPN1BQ9BZX4 212 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 CNOT10Q9H9A5 744 aaKnown RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ROPN1Q9HAT0 212 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ETNK1Q9HBU6 452 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 TCP11X1B4DZS4 312 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 BRAFP15056 766 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 TGM2P21980 687 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ATN1P54259 1190 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 AP1B1Q10567 949 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 PDCD2Q16342 344 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 INTS6LQ5JSJ4 861 aaKnown RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 SMYD5Q6GMV2 418 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 DENND5BQ6ZUT9 1274 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 C4orf33Q8N1A6 199 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 PHC3Q8NDX5 983 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 KCTD13Q8WZ19 329 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ECT2Q9H8V3 914 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ABI2Q9NYB9 513 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 G3BP2Q9UN86 482 aaKnown RBP12.06□□□□□ -0.48
SHMT2-212ENST00000554467 ASB3Q9Y575 518 aa12.06□□□□□ -0.48
SHMT2-212ENST00000554467 NT5C1B-RDH14C9J2C7 533 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 SMIM24O75264 130 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 LTFP02788 710 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 VAV1P15498 845 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 STIP1P31948 543 aaKnown RBP12.05□□□□□ -0.48
SHMT2-212ENST00000554467 GPR15P49685 360 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 ARPP19P56211 112 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 PKN2Q16513 984 aaKnown RBP12.05□□□□□ -0.48
SHMT2-212ENST00000554467 SLC39A12Q504Y0 691 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 TRIM68Q6AZZ1 485 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 MFSD5Q6N075 450 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 VSTM1Q6UX27 236 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 PALM2Q8IXS6 379 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 PDIK1LQ8N165 341 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 FBF1Q8TES7 1133 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 CYLDQ9NQC7 956 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 STAP1Q9ULZ2 295 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 C9IYK1 514 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 RASA4BC9J798 803 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 RASA4O43374 803 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 SOAT2O75908 522 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 GRK4P32298 578 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 GRIK1P39086 918 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 OLIG2Q13516 323 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 BSPRYQ5W0U4 402 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 FAM47EQ6ZV65 393 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 BHLHA9Q7RTU4 235 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 GALNT15Q8N3T1 639 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 RNF34Q969K3 372 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 SLC2A13Q96QE2 648 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 KLF6Q99612 283 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-212ENST00000554467 CCDC77Q9BR77 488 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 FRMD8P1Q9BZ68 369 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-212ENST00000554467 STK38LQ9Y2H1 464 aa12.05□□□□□ -0.48
SHMT2-212ENST00000554467 USP3Q9Y6I4 520 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms