RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 GJB4Q9NTQ9 266 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 KIF17Q9P2E2 1029 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 IFT80Q9P2H3 777 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 TRPS1Q9UHF7 1281 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ING1Q9UK53 422 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 MED16Q9Y2X0 877 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 TMX2Q9Y320 296 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 TSC22D4Q9Y3Q8 395 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ACTL7AQ9Y615 435 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 HS3ST3A1Q9Y663 406 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 MAST4O15021 2626 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 PI4KAP2A4QPH2 592 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 MBD3L4A6NDZ8 208 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 MBD3L3A6NE82 208 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 AQP12BA6NM10 295 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 CHL1O00533 1208 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 PIP5K1BO14986 540 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 NPC1O15118 1278 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 SOAT2O75908 522 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 UNC5CO95185 931 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 NDST3O95803 873 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 IL18BPO95998 194 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 AMY1AP04745 511 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 GRPP07492 148 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 HOXC6P09630 235 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 IFIT1P09914 478 aaKnown RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 FAM163BP0C2L3 166 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 RARBP10826 455 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ALAS1P13196 640 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ATP5JP18859 108 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 IL1R2P27930 398 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ADORA2AP29274 412 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 NBL1P41271 181 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ALDH1A3P47895 512 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 BACE1P56817 501 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 RIPK4P57078 832 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 FOXO1Q12778 655 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 KLF10Q13118 480 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 SP140Q13342 867 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ADAM15Q13444 863 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 MTM1Q13496 603 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 TRPC3Q13507 836 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 GRB14Q14449 540 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 SPDYAQ5MJ70 313 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 EMC10Q5UCC4 262 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ARL6IP4Q66PJ3 421 aaKnown RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 RETSATQ6NUM9 610 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 CRIP3Q6Q6R5 217 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 FAM90A1Q86YD7 464 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ESX1Q8N693 406 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 PI4KAP1Q8N8J0 262 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 PLA2G15Q8NCC3 412 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 NLGN4YQ8NFZ3 816 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 PPP1R14CQ8TAE6 165 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 LPPQ93052 612 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 NKD2Q969F2 451 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 SPSB4Q96A44 273 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 C18orf8Q96DM3 657 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 NEUROD6Q96NK8 337 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 WWC2-AS2Q96NR7 200 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 PRRX2Q99811 253 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 UPF3BQ9BZI7 483 aaKnown RBP4.21□□□□□ -1.74
LIMA1-208ENST00000551691 TRPV6Q9H1D0 765 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 SLC13A4Q9UKG4 626 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 CEP250Q9BV73 2442 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 ITIH6Q6UXX5 1313 aa4.21□□□□□ -1.74
LIMA1-208ENST00000551691 KMT2EQ8IZD2 1858 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 BPTFQ12830 3046 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 MYO7AQ13402 2215 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 A0A1B0GVC2 190 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 CLCA1A8K7I4 914 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ZNF785A8K8V0 405 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 M0QYG6 137 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 RAB27BO00194 218 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 FCHO1O14526 889 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ARHGAP6O43182 974 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ABHD16AO95870 558 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 CD4P01730 458 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 FPR1P21462 350 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 PCSK1P29120 753 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 SERPINF1P36955 418 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 KIR2DL3P43628 341 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 RRADP55042 308 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 RAP2BP61225 183 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 SETQ01105 290 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 GALNT1Q10472 559 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 CTBP1Q13363 440 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 GCKRQ14397 625 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 SLC29A2Q14542 456 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 TOMM20Q15388 145 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 PRAMEF14Q5SWL7 426 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ATPAF1Q5TC12 328 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 VPS53Q5VIR6 699 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 AFMIDQ63HM1 303 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ARHGEF18Q6ZSZ5 1173 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 LRRTM4Q86VH4 590 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 PLXDC1Q8IUK5 500 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 HERC6Q8IVU3 1022 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 TMTC2Q8N394 836 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 KLHDC9Q8NEP7 349 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms