RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 MAP7Q14244 749 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PDK3Q15120 406 aa9□□□□□ -0.97
TDP1-204ENST00000545686 CCDC153Q494R4 210 aa9□□□□□ -0.97
TDP1-204ENST00000545686 MMEL1Q495T6 779 aa9□□□□□ -0.97
TDP1-204ENST00000545686 RAB6CQ53S08 254 aa9□□□□□ -0.97
TDP1-204ENST00000545686 METTL21CQ5VZV1 264 aa9□□□□□ -0.97
TDP1-204ENST00000545686 HEATR6Q6AI08 1181 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 LRRC8BQ6P9F7 803 aa9□□□□□ -0.97
TDP1-204ENST00000545686 UGT2A3Q6UWM9 527 aa9□□□□□ -0.97
TDP1-204ENST00000545686 METTL7BQ6UX53 244 aa9□□□□□ -0.97
TDP1-204ENST00000545686 CATSPERGQ6ZRH7 1159 aa9□□□□□ -0.97
TDP1-204ENST00000545686 MARVELD2Q8N4S9 558 aa9□□□□□ -0.97
TDP1-204ENST00000545686 POU5F2Q8N7G0 328 aa9□□□□□ -0.97
TDP1-204ENST00000545686 ICA1LQ8NDH6 482 aa9□□□□□ -0.97
TDP1-204ENST00000545686 CATSPER1Q8NEC5 780 aa9□□□□□ -0.97
TDP1-204ENST00000545686 UBA3Q8TBC4 463 aa9□□□□□ -0.97
TDP1-204ENST00000545686 STON2Q8WXE9 905 aa9□□□□□ -0.97
TDP1-204ENST00000545686 ISL2Q96A47 359 aa9□□□□□ -0.97
TDP1-204ENST00000545686 NFKBIZQ9BYH8 718 aa9□□□□□ -0.97
TDP1-204ENST00000545686 RAB6CQ9H0N0 254 aa9□□□□□ -0.97
TDP1-204ENST00000545686 Q9H521 79 aa9□□□□□ -0.97
TDP1-204ENST00000545686 ASB7Q9H672 318 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PICK1Q9NRD5 415 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PLK2Q9NYY3 685 aa9□□□□□ -0.97
TDP1-204ENST00000545686 COPG2Q9UBF2 871 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PPP1R1BQ9UD71 204 aaPredicted RBP9□□□□□ -0.97
TDP1-204ENST00000545686 ADAM28Q9UKQ2 775 aa9□□□□□ -0.97
TDP1-204ENST00000545686 TSPAN16Q9UKR8 245 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PCDHB12Q9Y5F1 795 aa9□□□□□ -0.97
TDP1-204ENST00000545686 ZNF236Q9UL36 1845 aa9□□□□□ -0.97
TDP1-204ENST00000545686 SCN1AP35498 2009 aa9□□□□□ -0.97
TDP1-204ENST00000545686 A0A0A0MRY4 1105 aa9□□□□□ -0.97
TDP1-204ENST00000545686 TMEM114B3SHH9 223 aa9□□□□□ -0.97
TDP1-204ENST00000545686 H3BNX3 289 aa9□□□□□ -0.97
TDP1-204ENST00000545686 DENRO43583 198 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 H2AFYO75367 372 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 LGR5O75473 907 aa9□□□□□ -0.97
TDP1-204ENST00000545686 TOP3BO95985 862 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 ITGA2BP08514 1039 aa9□□□□□ -0.97
TDP1-204ENST00000545686 RAG1P15918 1043 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PTPRAP18433 802 aa9□□□□□ -0.97
TDP1-204ENST00000545686 CYP3A5P20815 502 aa9□□□□□ -0.97
TDP1-204ENST00000545686 RGS2P41220 211 aa9□□□□□ -0.97
TDP1-204ENST00000545686 MAGEA12P43365 314 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PTPN9P43378 593 aa9□□□□□ -0.97
TDP1-204ENST00000545686 NUMBP49757 651 aa9□□□□□ -0.97
TDP1-204ENST00000545686 ZNF280AP59817 542 aaPredicted RBP9□□□□□ -0.97
TDP1-204ENST00000545686 CXCL9Q07325 125 aa9□□□□□ -0.97
TDP1-204ENST00000545686 TBL3Q12788 808 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 DLG1Q12959 904 aa9□□□□□ -0.97
TDP1-204ENST00000545686 TRIP10Q15642 601 aa9□□□□□ -0.97
TDP1-204ENST00000545686 KYAT1Q16773 422 aa9□□□□□ -0.97
TDP1-204ENST00000545686 LPCAT4Q643R3 524 aa9□□□□□ -0.97
TDP1-204ENST00000545686 EEF1DP3Q658K8 133 aa9□□□□□ -0.97
TDP1-204ENST00000545686 SCYL2Q6P3W7 929 aa9□□□□□ -0.97
TDP1-204ENST00000545686 DEFB107AQ8IZN7 70 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PIWIL1Q96J94 861 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 SPATA13Q96N96 652 aa9□□□□□ -0.97
TDP1-204ENST00000545686 EPAS1Q99814 870 aa9□□□□□ -0.97
TDP1-204ENST00000545686 QTRT2Q9H974 415 aaKnown RBP9□□□□□ -0.97
TDP1-204ENST00000545686 GPATCH2LQ9NWQ4 482 aa9□□□□□ -0.97
TDP1-204ENST00000545686 HOXC10Q9NYD6 342 aa9□□□□□ -0.97
TDP1-204ENST00000545686 TMCO1Q9UM00 188 aa9□□□□□ -0.97
TDP1-204ENST00000545686 PSMD13Q9UNM6 376 aa9□□□□□ -0.97
TDP1-204ENST00000545686 FNDC1Q4ZHG4 1894 aaPredicted RBP9□□□□□ -0.97
TDP1-204ENST00000545686 ZBTB42B2RXF5 422 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 SLC22A2O15244 555 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 ZNF189O75820 626 aaPredicted RBP8.99□□□□□ -0.97
TDP1-204ENST00000545686 PDE5AO76074 875 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 PRKCGP05129 697 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 PFKMP08237 780 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 MCF2P10911 925 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 RALBP11234 206 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 COX4I1P13073 169 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 SERPINB6P35237 376 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 ERFP50548 548 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 HK2P52789 917 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 HMGCS2P54868 508 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 OSTNP61366 133 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 SLC6A3Q01959 620 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 MBTD1Q05BQ5 628 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 CA9Q16790 459 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 TMEM132AQ24JP5 1023 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 JADE1Q6IE81 842 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 ZFP1Q6P2D0 407 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 C16orf46Q6P387 395 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 SPATA24Q86W54 205 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 C10orf107Q8IVU9 208 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 ALDH16A1Q8IZ83 802 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 B4GALNT2Q8NHY0 566 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 SHKBP1Q8TBC3 707 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 RNF217Q8TC41 542 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 TFB1MQ8WVM0 346 aaKnown RBP8.99□□□□□ -0.97
TDP1-204ENST00000545686 SREK1Q8WXA9 508 aaKnown RBP8.99□□□□□ -0.97
TDP1-204ENST00000545686 EZH1Q92800 747 aaPredicted RBP8.99□□□□□ -0.97
TDP1-204ENST00000545686 HPDLQ96IR7 371 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 TRIM56Q9BRZ2 755 aaKnown RBP8.99□□□□□ -0.97
TDP1-204ENST00000545686 NT5C1AQ9BXI3 368 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 SLC4A5Q9BY07 1137 aa8.99□□□□□ -0.97
TDP1-204ENST00000545686 PTTG2Q9NZH5 202 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms