RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CYFIP2Q96F07 1278 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 C12orf57Q99622 126 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 HINFPQ9BQA5 517 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 UNC93B1Q9H1C4 597 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 S100A14Q9HCY8 104 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 CD274Q9NZQ7 290 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 PCDHB8Q9UN66 801 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 COG5Q9UP83 839 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 REXO2Q9Y3B8 237 aaKnown RBP9.13□□□□□ -0.95
VPS13D-212ENST00000543766 HCN4Q9Y3Q4 1203 aa9.13□□□□□ -0.95
VPS13D-212ENST00000543766 hCG_2039718K7EN88 272 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CIDEAO60543 219 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 MFAP3LO75121 409 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PHF2O75151 1096 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ODC1P11926 461 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 HSPA9P38646 679 aaKnown RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PRIM2P49643 509 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 NFYCQ13952 458 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 OR7E24Q6IFN5 339 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ZBTB46Q86UZ6 589 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CLEC4FQ8N1N0 589 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 XKR8Q9H6D3 395 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 SLC38A10Q9HBR0 1119 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 TREM1Q9NP99 234 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 SACM1LQ9NTJ5 587 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ZNF229Q9UJW7 825 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 SIPA1L3O60292 1781 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PAEPP09466 180 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CHRM3P20309 590 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CHRNA5P30532 468 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 BCAP31P51572 246 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ARPP19P56211 112 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ERVK-8P63133 956 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 SKP1P63208 163 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 XIAPP98170 497 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 MPP1Q00013 466 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 KRT17Q04695 432 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 RBL2Q08999 1139 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PHKG1Q16816 387 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 LHFPL2Q6ZUX7 228 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 GPR65Q8IYL9 337 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 LINC00518Q8N0U6 118 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 FBXL16Q8N461 479 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 XXYLT1Q8NBI6 393 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 TRPV3Q8NET8 790 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ANAPC16Q96DE5 110 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CCDC51Q96ER9 411 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 RMDN3Q96TC7 470 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ASPSCR1Q9BZE9 553 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ERVK-11Q9UQG0 969 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ENTPD4Q9Y227 616 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 RUVBL1Q9Y265 456 aaKnown RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 RAD54BQ9Y620 910 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CLIC4Q9Y696 253 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 GH2P01242 217 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 FGFR2P21802 821 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 MDH1P40925 334 aaKnown RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 RGS7P49802 495 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 SLC26A2P50443 739 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 STX17P56962 302 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 ERVK-24P63145 666 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 BTKQ06187 659 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CMPK2Q5EBM0 449 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 XKR3Q5GH77 459 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 INTS11Q5TA45 600 aaKnown RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 HES5Q5TA89 166 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 FOXB2Q5VYV0 432 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 FBXO46Q6PJ61 603 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PAOXQ6QHF9 649 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 S100A7AQ86SG5 101 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 GALNT4Q8N4A0 578 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 CRACR2BQ8N4Y2 399 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 UBL4BQ8N7F7 174 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 OR9A1PQ8NGU1 263 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PDCD6IPQ8WUM4 868 aaKnown RBP9.12□□□□□ -0.95
VPS13D-212ENST00000543766 KRT84Q9NSB2 600 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 BABAM1Q9NWV8 329 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 OBP2AQ9NY56 170 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 PHTF1Q9UMS5 762 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 SNX7Q9UNH6 387 aa9.12□□□□□ -0.95
VPS13D-212ENST00000543766 LRP5O75197 1615 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 RREB1Q92766 1687 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 ZNF98A6NK75 572 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 CAPN9O14815 690 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 ADH1CP00326 375 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 HMGN1P05114 100 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 FAM228BP0C875 321 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 UBE3AQ05086 875 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 ELOAQ14241 798 aaKnown RBP9.11□□□□□ -0.95
VPS13D-212ENST00000543766 LIN52Q52LA3 116 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 DPP9Q86TI2 863 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 SETD3Q86TU7 594 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-212ENST00000543766 ZNF227Q86WZ6 799 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 MIB1Q86YT6 1006 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 IFT20Q8IY31 132 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 MREGQ8N565 214 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 MINDY1Q8N5J2 469 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 MB21D1Q8N884 522 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 FLAD1Q8NFF5 587 aa9.11□□□□□ -0.95
VPS13D-212ENST00000543766 NANPQ8TBE9 248 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms