RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 MMP8P22894 467 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 TNFSF4P23510 183 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 CDKN2AP42771 156 aaKnown RBP4.48□□□□□ -1.69
PRKDC-210ENST00000541488 PGM5Q15124 567 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 TWIST1Q15672 202 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 LONRF1Q17RB8 773 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 SLC5A9Q2M3M2 681 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 SMTNL2Q2TAL5 461 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 LIPMQ5VYY2 423 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 KSR2Q6VAB6 950 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 C9orf47Q6ZRZ4 202 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 RFX8Q6ZV50 586 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 GJA10Q969M2 543 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 ZNF845Q96IR2 970 aaPredicted RBP4.48□□□□□ -1.69
PRKDC-210ENST00000541488 ABHD14AQ9BUJ0 271 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 SARGQ9BW04 601 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 RNF26Q9BY78 433 aaPredicted RBP4.48□□□□□ -1.69
PRKDC-210ENST00000541488 MLXIPQ9HAP2 919 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 PRDM16Q9HAZ2 1276 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 TMEM8AQ9HCN3 771 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 FSCN3Q9NQT6 498 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 PAPOLBQ9NRJ5 636 aaKnown RBP4.48□□□□□ -1.69
PRKDC-210ENST00000541488 DECR2Q9NUI1 292 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 CHPF2Q9P2E5 772 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 TRBV5-3A0A0A0MS03 114 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 A6NNC1 897 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 PODXLO00592 558 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 CTIFO43310 598 aaKnown RBP4.47□□□□□ -1.69
PRKDC-210ENST00000541488 ZC3H11AO75152 810 aaKnown RBP eCLIP4.47□□□□□ -1.69
PRKDC-210ENST00000541488 EPN2O95208 641 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 KAT7O95251 611 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 ENO1P06733 434 aaKnown RBP4.47□□□□□ -1.69
PRKDC-210ENST00000541488 FGF2P09038 288 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 AKR1A1P14550 325 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 SLC5A2P31639 672 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 CIITAP33076 1130 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 THBS3P49746 956 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 GAD2Q05329 585 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 DMWDQ09019 674 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 INPP5JQ15735 1006 aaPredicted RBP4.47□□□□□ -1.69
PRKDC-210ENST00000541488 SLC35G1Q2M3R5 365 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 KIAA1161Q6NSJ0 714 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 MSANTD2Q6P1R3 559 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 TLDC1Q6P9B6 456 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 USP17L6PQ6QN14 398 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 RASGRP3Q8IV61 690 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 PELI3Q8N2H9 469 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 SLC44A5Q8NCS7 719 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 MPLKIPQ8TAP9 179 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 SLC22A17Q8WUG5 538 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 ASB12Q8WXK4 309 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 ZNF566Q969W8 418 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 PIMREGQ9BSJ6 248 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 HIPK2Q9H2X6 1198 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 METTL14Q9HCE5 456 aaKnown RBP4.47□□□□□ -1.69
PRKDC-210ENST00000541488 STARD7Q9NQZ5 370 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 THSD1Q9NS62 852 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 FBXO28Q9NVF7 368 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.47□□□□□ -1.69
PRKDC-210ENST00000541488 SLC8A2Q9UPR5 921 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 CEP83Q9Y592 693 aa4.47□□□□□ -1.69
PRKDC-210ENST00000541488 EMSYQ7Z589 1322 aa4.46□□□□□ -1.69
PRKDC-210ENST00000541488 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.46□□□□□ -1.7
PRKDC-210ENST00000541488 PNMA6EA0A0J9YXQ4 647 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 M0QYT0 321 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 NPC1O15118 1278 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 TAF5LO75529 589 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 CBFBQ13951 182 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 SEMA3AQ14563 771 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 PTGR1Q14914 329 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 ANKRD40Q6AI12 368 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 HMBOX1Q6NT76 420 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 MEPCEQ7L2J0 689 aaKnown RBP4.46□□□□□ -1.7
PRKDC-210ENST00000541488 GLMPQ8WWB7 406 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 OVCA2Q8WZ82 227 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 MSI2Q96DH6 328 aaKnown RBP4.46□□□□□ -1.7
PRKDC-210ENST00000541488 P2RY11Q96G91 374 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 RIPOR3Q96MK2 946 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 PCDHA12Q9UN75 941 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 PCDHGB2Q9Y5G2 931 aa4.46□□□□□ -1.7
PRKDC-210ENST00000541488 A0A0G2JK05 382 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 DPPA5A6NC42 116 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 H0YGN5 161 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 TLX3O43711 291 aaPredicted RBP4.45□□□□□ -1.7
PRKDC-210ENST00000541488 RFPL3SP0C7P2 107 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 ALDH7A1P49419 539 aaKnown RBP4.45□□□□□ -1.7
PRKDC-210ENST00000541488 SHC2P98077 582 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 NSUN2Q08J23 767 aaKnown RBP eCLIP4.45□□□□□ -1.7
PRKDC-210ENST00000541488 MAPKAPK3Q16644 382 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 TTC30AQ86WT1 665 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 LAS2Q8IYD9 372 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 BCAS4Q8TDM0 211 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 IPO4Q8TEX9 1081 aaKnown RBP4.45□□□□□ -1.7
PRKDC-210ENST00000541488 NPIPB3Q92617 1050 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 PMM1Q92871 262 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 C18orf8Q96DM3 657 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 MARK4Q96L34 752 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 GDF15Q99988 308 aa4.45□□□□□ -1.7
PRKDC-210ENST00000541488 MRPL44Q9H9J2 332 aaKnown RBP4.45□□□□□ -1.7
PRKDC-210ENST00000541488 AGO2Q9UKV8 859 aaKnown RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms