RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RNF43Q68DV7 783 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 UNC5AQ6ZN44 842 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 ABCF3Q9NUQ8 709 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 CENPFP49454 3210 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 FAM72CH0Y354 149 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 ALDH1A1P00352 501 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 AMHP03971 560 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 USP17L7P0C7H9 530 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 FAAP100Q0VG06 881 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 NME3Q13232 169 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 PDK1Q15118 436 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 FAM72AQ5TYM5 149 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 FAM72DQ6L9T8 149 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 FAM72BQ86X60 149 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 SLC7A14Q8TBB6 771 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 PGBD4Q96DM1 585 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 CFAP36Q96G28 342 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 P2RY11Q96G91 374 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 SERAC1Q96JX3 654 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 SMYD2Q9NRG4 433 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.21□□□□□ -0.139e-28■□□□□ 11.3
RTN3-210ENST00000540798 FAM159BA6NKW6 160 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 EEF2KO00418 725 aaKnown RBP14.21□□□□□ -0.14
RTN3-210ENST00000540798 ALADP13716 330 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 WASHC5Q12768 1159 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 TUSC3Q13454 348 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 ZKSCAN8Q15776 578 aaPredicted RBP14.21□□□□□ -0.14
RTN3-210ENST00000540798 LVRNQ6Q4G3 990 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 BEND5Q7L4P6 421 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 CCDC33Q8N5R6 958 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 DSEQ9UL01 958 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 PCDHA11Q9Y5I1 949 aa14.21□□□□□ -0.14
RTN3-210ENST00000540798 CXorf49A8MYA2 514 aaPredicted RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 EDF1O60869 148 aaKnown RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 SKIP12755 728 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 MAP2K2P36507 400 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 ETV4P43268 484 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 CXCR3P49682 368 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 MGAT5Q09328 741 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 EIF4EBP2Q13542 120 aaPredicted RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 CCDC91Q7Z6B0 441 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 MPP5Q8N3R9 675 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 APBB2Q92870 758 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 PITPNM3Q9BZ71 974 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 HAUS2Q9NVX0 235 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 IGSF9Q9P2J2 1179 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 RNF103O00237 685 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 PPP1R12AO14974 1030 aaPredicted RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 ALDH1A2O94788 518 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 POMCP01189 267 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 INHBAP08476 426 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 ZNF135P52742 658 aaPredicted RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 TTC39BQ5VTQ0 682 aaPredicted RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 LRRC8BQ6P9F7 803 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 DENND5BQ6ZUT9 1274 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 LRRC6Q86X45 466 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 COLGALT1Q8NBJ5 622 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 PCSK9Q8NBP7 692 aaKnown RBP14.2□□□□□ -0.14
RTN3-210ENST00000540798 GSDMBQ8TAX9 411 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 TCP10LQ8TDR4 215 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 RSPH1Q8WYR4 309 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 SPOCK2Q92563 424 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 APOPT1Q96IL0 206 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 ADAM2Q99965 735 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 RHOBTB2Q9BYZ6 727 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 TMLHEQ9NVH6 421 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 NR2E3Q9Y5X4 410 aa14.2□□□□□ -0.14
RTN3-210ENST00000540798 CAPN9O14815 690 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 RASSF9O75901 435 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 F9P00740 461 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 PRKAR2AP13861 404 aaKnown RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 GBP2P32456 591 aaPredicted RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 GRIA1P42261 906 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 CCDC15Q0P6D6 951 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 MAP3K21Q5TCX8 1036 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 ECHDC2Q86YB7 292 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 PAIP2Q9BPZ3 127 aaKnown RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 VPS11Q9H270 941 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 PRDM12Q9H4Q4 367 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 GPBP1L1Q9HC44 474 aaPredicted RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 MKS1Q9NXB0 559 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 MOCS1Q9NZB8 636 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 PHTF1Q9UMS5 762 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 SYNJ2BP-COX16A0A087WUM0 186 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 I3L4J1 428 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 CREB3O43889 395 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 IGLV3-25P01717 112 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 MT-ND3P03897 115 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 NCAM1P13591 858 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 ADRA1DP25100 572 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 CCNFP41002 786 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 BRCC3P46736 316 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 DNAJC3Q13217 504 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 PARP6Q2NL67 630 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 HHATQ5VTY9 493 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 TRAF7Q6Q0C0 670 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 METTL23Q86XA0 190 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 OR10T2Q8NGX3 314 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 ZNF75CPQ92670 426 aaPredicted RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 OXNAD1Q96HP4 312 aaPredicted RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms