RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SOX11P35716 441 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 NPY2RP49146 381 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 RARS2Q5T160 578 aaKnown RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 SKA1Q96BD8 255 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 VAT1Q99536 393 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 TBL1YQ9BQ87 522 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 IL1RL2Q9HB29 575 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 FBXO10Q9UK96 956 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 PTCH2Q9Y6C5 1203 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 SEPT4O43236 478 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 ITGB6P18564 788 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 CHKAP35790 457 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 FBXL19Q6PCT2 694 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 TMEM159Q96B96 161 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 HES6Q96HZ4 224 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 CEP19Q96LK0 163 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 ACP6Q9NPH0 428 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 SHOC2Q9UQ13 582 aa14.46□□□□□ -0.1
USP3-204ENST00000540797 OR6C75A6NL08 312 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 OCM2P0CE71 109 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 OCMP0CE72 109 aaPredicted RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 FGFR1P11362 822 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 ZNF7P17097 686 aaPredicted RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 SERPINA4P29622 427 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 EEF1DP29692 281 aaKnown RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 NDUFV1P49821 464 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 ZACNQ401N2 412 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 SETD3Q86TU7 594 aaPredicted RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 RBM23Q86U06 439 aaKnown RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 TOP6BLQ8N6T0 577 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 FAM162AQ96A26 154 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 KCNK16Q96T55 309 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 POLR1EQ9GZS1 481 aaKnown RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 ZDHHC6Q9H6R6 413 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 CTNNAL1Q9UBT7 734 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 FZD9O00144 591 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 DGKIO75912 1065 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 CD151P48509 253 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 ATXN3P54252 364 aaPredicted RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 SDHAF4Q5VUM1 108 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 SLC24A5Q71RS6 500 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 ERP27Q96DN0 273 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 FAR2Q96K12 515 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 TTPALQ9BTX7 342 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 CAND2O75155 1236 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 ERVK-10P10266 1014 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 LAG3P18627 525 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 NOL9Q5SY16 702 aaKnown RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 LAYNQ6UX15 382 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 LRRC8DQ7L1W4 858 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 DENND1CQ8IV53 801 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 UPF1Q92900 1129 aaKnown RBP eCLIP14.45□□□□□ -0.1
USP3-204ENST00000540797 SLC28A3Q9HAS3 691 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 DERAQ9Y315 318 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 APOC4-APOC2K7ER74 178 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 APOC2P02655 101 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 SMPD1P17405 629 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 PRMT2P55345 433 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 DNAJC3Q13217 504 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 DDR2Q16832 855 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 HYIQ5T013 277 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 UTP6Q9NYH9 597 aaKnown RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 PADI3Q9ULW8 664 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 MON2Q7Z3U7 1717 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 GLUD1P00367 558 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 INHAP05111 366 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 KDELR1P24390 212 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 MGAT1P26572 445 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 OR1D2P34982 312 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 MAMLD1Q13495 774 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 FAM71AQ8IYT1 594 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 ICA1LQ8NDH6 482 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 OR9Q1Q8NGQ5 310 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 NR1H4Q96RI1 486 aaPredicted RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 C1QTNF7Q9BXJ2 289 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 PRDM16Q9HAZ2 1276 aa14.45□□□□□ -0.1
USP3-204ENST00000540797 PIH1D1Q9NWS0 290 aaKnown RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 PNMA8BQ9ULN7 279 aaPredicted RBP14.45□□□□□ -0.1
USP3-204ENST00000540797 LOC100653049A0A140TA62 436 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 WDR27A2RRH5 827 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 KRT34O76011 436 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 FGBP02675 491 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 HALP42357 657 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 ZNF143P52747 638 aaPredicted RBP14.44□□□□□ -0.1
USP3-204ENST00000540797 PRKCZQ05513 592 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 OTOAQ7RTW8 1153 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 KCNV2Q8TDN2 545 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 APBB2Q92870 758 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PPP1R16AQ96I34 528 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 RBBP8Q99708 897 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 ARHGAP26Q9UNA1 814 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 SOWAHBA6NEL2 793 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 MYO1GB0I1T2 1018 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 RARAP10276 462 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 ICAM3P32942 547 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 ERFP50548 548 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 BMT2Q1RMZ1 405 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PLPP4Q5VZY2 271 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 C9orf57Q5W0N0 161 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PRPF39Q86UA1 669 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms