RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 TFAP2BQ92481 460 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 NT5C1BQ96P26 610 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 METTL14Q9HCE5 456 aaKnown RBP14.73□□□□□ -0.05
SNHG1-213ENST00000540725 WDFY3Q8IZQ1 3526 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 SPEGQ15772 3267 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 PSMA7O14818 248 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 CAMK2GQ13555 558 aaPredicted RBP14.73□□□□□ -0.05
SNHG1-213ENST00000540725 STIM1Q13586 685 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 HNRNPDQ14103 355 aaKnown RBP14.73□□□□□ -0.05
SNHG1-213ENST00000540725 FNDC3BQ53EP0 1204 aaKnown RBP14.73□□□□□ -0.05
SNHG1-213ENST00000540725 DCAF12L1Q5VU92 463 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 MSANTD2Q6P1R3 559 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 CHST9Q7L1S5 443 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 OR2T3Q8NH03 318 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 TMA16Q96EY4 203 aaKnown RBP14.73□□□□□ -0.05
SNHG1-213ENST00000540725 CEP63Q96MT8 703 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 NUP58Q9BVL2 599 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 ZDHHC5Q9C0B5 715 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 MIR1-1HGQ9H1L0 117 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 ABCB8Q9NUT2 735 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 HOOK1Q9UJC3 728 aaKnown RBP14.73□□□□□ -0.05
SNHG1-213ENST00000540725 KLK13Q9UKR3 277 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 PCDHB4Q9Y5E5 795 aa14.73□□□□□ -0.05
SNHG1-213ENST00000540725 ATRXP46100 2492 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 METTL12A8MUP2 240 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 H0Y626 953 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 M0QYV0 167 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 PIK3R2O00459 728 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 PMM2O15305 246 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 SH3BP5O60239 455 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 GABBR2O75899 941 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 TRIM16O95361 564 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 RDXP35241 583 aaKnown RBP14.72□□□□□ -0.05
SNHG1-213ENST00000540725 CCDC40Q4G0X9 1142 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 PMF1Q6P1K2 205 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 FAM124AQ86V42 546 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 PPM1KQ8N3J5 372 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 ZNF366Q8N895 744 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.72□□□□□ -0.05
SNHG1-213ENST00000540725 CYB5D2Q8WUJ1 264 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 SLC35F5Q8WV83 523 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 IRGQQ8WZA9 623 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 KAT5Q92993 513 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 DHTKD1Q96HY7 919 aaPredicted RBP14.72□□□□□ -0.05
SNHG1-213ENST00000540725 TIGD1Q96MW7 591 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 CAMK1GQ96NX5 476 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 ZSWIM1Q9BR11 485 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 TMEM245Q9H330 911 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 GGA2Q9UJY4 613 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.72□□□□□ -0.05
SNHG1-213ENST00000540725 PLA2G4CQ9UP65 541 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 MSRB2Q9Y3D2 182 aa14.72□□□□□ -0.05
SNHG1-213ENST00000540725 PTPRBP23467 1997 aa14.71□□□□□ -0.05
SNHG1-213ENST00000540725 APC2O95996 2303 aa14.71□□□□□ -0.05
SNHG1-213ENST00000540725 NYNRINQ9P2P1 1898 aaKnown RBP14.71□□□□□ -0.05
SNHG1-213ENST00000540725 RNF225M0QZC1 329 aaPredicted RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 BCAT2O15382 392 aaPredicted RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 IGLV3-27P01718 113 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 LTFP02788 710 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 PABPC1P11940 636 aaKnown RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 CD44P16070 742 aaKnown RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 BRD2P25440 801 aaKnown RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 SGSHP51688 502 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 STILQ15468 1287 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 TRIP6Q15654 476 aaKnown RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 CNGA2Q16280 664 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 ZNF423Q2M1K9 1284 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 NUGGCQ68CJ6 796 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 ISM2Q6H9L7 571 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 RFWD3Q6PCD5 774 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 KIAA0907Q7Z7F0 614 aaPredicted RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 ADIPOR2Q86V24 386 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 NAXDQ8IW45 347 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 AHI1Q8N157 1196 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 CHCHD4Q8N4Q1 142 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 WFDC5Q8TCV5 224 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 CLEC4CQ8WTT0 213 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 PCED1AQ9H1Q7 454 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 LHX5Q9H2C1 402 aa14.71□□□□□ -0.06
SNHG1-213ENST00000540725 EIF2B4Q9UI10 523 aaKnown RBP14.71□□□□□ -0.06
SNHG1-213ENST00000540725 PLXNB3Q9ULL4 1909 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 FREM2Q5SZK8 3169 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 TBL1XO60907 577 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 CALCAP01258 141 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 PPP1R2P41236 205 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 SLC11A2P49281 568 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 RING1Q06587 406 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 CETN1Q12798 172 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 PTPRNQ16849 979 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 FAM133BQ5BKY9 247 aaKnown RBP14.7□□□□□ -0.06
SNHG1-213ENST00000540725 MPP7Q5T2T1 576 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 PIK3R6Q5UE93 754 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 MBLAC2Q68D91 279 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 KLHL10Q6JEL2 608 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 RAB44Q7Z6P3 723 aaPredicted RBP14.7□□□□□ -0.06
SNHG1-213ENST00000540725 UNC45BQ8IWX7 931 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 LMO3Q8TAP4 145 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 ZCCHC14Q8WYQ9 949 aaKnown RBP14.7□□□□□ -0.06
SNHG1-213ENST00000540725 GOLGA1Q92805 767 aa14.7□□□□□ -0.06
SNHG1-213ENST00000540725 HSFY1Q96LI6 401 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms