RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CA8P35219 290 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 WDR4P57081 412 aaKnown RBP11.08□□□□□ -0.63
CLIP1-213ENST00000540338 MSS51Q4VC12 460 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 MTDHQ86UE4 582 aaKnown RBP11.08□□□□□ -0.63
CLIP1-213ENST00000540338 PYROXD2Q8N2H3 581 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 P2RY11Q96G91 374 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 OR12D3Q9UGF7 316 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 PCDHA11Q9Y5I1 949 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 CLUHO75153 1309 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 NCF2P19878 526 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 AIF1P55008 147 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 YWHAHQ04917 246 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 RASA2Q15283 850 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 ANO4Q32M45 955 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 SPOUT1Q5T280 376 aaKnown RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 NXNQ6DKJ4 435 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 CHADLQ6NUI6 762 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 LONP2Q86WA8 852 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 VANGL2Q9ULK5 521 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 ATAD5Q96QE3 1844 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 CCDC78A2IDD5 438 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 ANXA9O76027 345 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 CLNS1AP54105 237 aaKnown RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 SLC9A4Q6AI14 798 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 SDCCAG8Q86SQ7 713 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 FAM228AQ86W67 206 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 PPP1R2P1Q96PQ5 205 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 APOL2Q9BQE5 337 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 ARHGEF4Q9NR80 690 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 VGLL3A8MV65 326 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 RPSAP08865 295 aaKnown RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 FAM163BP0C2L3 166 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 FGFR1P11362 822 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 NDUFV1P49821 464 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 UGP2Q16851 508 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF618Q5T7W0 954 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 KIAA1841Q6NSI8 718 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 UNC5AQ6ZN44 842 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 PQLC3Q8N755 202 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 PPHLN1Q8NEY8 458 aaKnown RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 IPMKQ8NFU5 416 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 MYLPFQ96A32 169 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 NSL1Q96IY1 281 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 CELF6Q96J87 481 aaKnown RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 NUDCD1Q96RS6 583 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 VAT1Q99536 393 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 MYLK2Q9H1R3 596 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 SP110Q9HB58 689 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 DTLQ9NZJ0 730 aa11.08□□□□□ -0.64
CLIP1-213ENST00000540338 AAR2Q9Y312 384 aaKnown RBP11.08□□□□□ -0.64
CLIP1-213ENST00000540338 MYL2P10916 166 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 FOXN2P32314 431 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 CLCNKBP51801 687 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 SLC18A1P54219 525 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 SESN3P58005 492 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 LINC01465Q8N7H1 131 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 NETO2Q8NC67 525 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 NSMCE4AQ9NXX6 385 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 SLC17A7Q9P2U7 560 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 FZD10Q9ULW2 581 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 MAGEB16A2A368 324 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 ALDH1A1P00352 501 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 CCR1P32246 355 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 GP5P40197 560 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 CRADDP78560 199 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 KCNJ11Q14654 390 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 GEN1Q17RS7 908 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 KDELC2Q7Z4H8 507 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 LMNTD2Q8IXW0 634 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 VPS39Q96JC1 886 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 MBLAC1A4D2B0 266 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-213ENST00000540338 MFSD11O43934 449 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 LMNAP02545 664 aaKnown RBP11.07□□□□□ -0.64
CLIP1-213ENST00000540338 SLC2A3P11169 496 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 MLNP12872 115 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 PAX3P23760 479 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 FLT3LGP49771 235 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 MPP2Q14168 576 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 NFE2Q16621 373 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-213ENST00000540338 SPANXN3Q5MJ09 141 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 OTOAQ7RTW8 1153 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 CCDC117Q8IWD4 279 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-213ENST00000540338 USP6NLQ92738 828 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 KAT2BQ92831 832 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 TMEM120AQ9BXJ8 343 aa11.07□□□□□ -0.64
CLIP1-213ENST00000540338 MYBPHLA2RUH7 354 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ERI2A8K979 691 aaKnown RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 CCND1P24385 295 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 PURAQ00577 322 aaKnown RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 NAB1Q13506 487 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 USP10Q14694 798 aaKnown RBP11.06□□□□□ -0.64
CLIP1-213ENST00000540338 MUM1Q2TAK8 710 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 CES3Q6UWW8 571 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 STRA8Q7Z7C7 330 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 ARHGAP18Q8N392 663 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 SPOCK2Q92563 424 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 PCED1BQ96HM7 432 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 CD248Q9HCU0 757 aa11.06□□□□□ -0.64
CLIP1-213ENST00000540338 UBP1Q9NZI7 540 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms