RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CYB5D2Q8WUJ1 264 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 TSC1Q92574 1164 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 TWNKQ96RR1 684 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 USP28Q96RU2 1077 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 NT5C1AQ9BXI3 368 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 DUSP16Q9BY84 665 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 MARCH2Q9P0N8 246 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 SUN2Q9UH99 717 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 STRIP2Q9ULQ0 834 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 NCKAP1Q9Y2A7 1128 aa12.16□□□□□ -0.46
CLSTN3-209ENST00000539982 SLC12A8A0AV02 714 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 KIF20AO95235 890 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 HOXD9P28356 352 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 ACADVLP49748 655 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 DLG4P78352 724 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 SHBQ15464 509 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 SPOPLQ6IQ16 392 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 PCSK4Q6UW60 755 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 USP30Q70CQ3 517 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 SV2AQ7L0J3 742 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 CHST9Q7L1S5 443 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 RSRC2Q7L4I2 434 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 KIAA0907Q7Z7F0 614 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 ADIPOR2Q86V24 386 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 CACTIN-AS1Q8N1I8 211 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 ARHGAP18Q8N392 663 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 EID2Q8N6I1 236 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 IQUBQ8NA54 791 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 GOLGA5Q8TBA6 731 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 PLD4Q96BZ4 506 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 DHX58Q96C10 678 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 TMEM176AQ96HP8 235 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 UBXN6Q9BZV1 441 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 SLC39A2Q9NP94 309 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 DMAC2Q9NW81 257 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 SCML1Q9UN30 329 aa12.15□□□□□ -0.46
CLSTN3-209ENST00000539982 IKBKBO14920 756 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 YKT6O15498 198 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 WNT1P04628 370 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ATP5BP06576 529 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 DLDP09622 509 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ACTN2P35609 894 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 GALCP54803 685 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ZNF445P59923 1031 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 YWHAGP61981 247 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 TLE3Q04726 772 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 SFSWAPQ12872 951 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ILKQ13418 452 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 TRIP4Q15650 581 aaPredicted RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 C8orf34Q49A92 452 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 PPP1R26Q5T8A7 1209 aaPredicted RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ZNF776Q68DI1 518 aaPredicted RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 SLC9A9Q8IVB4 645 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 AHI1Q8N157 1196 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 TMC2Q8TDI7 906 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 GANCQ8TET4 914 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 TMEM174Q8WUU8 243 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 TMA16Q96EY4 203 aaKnown RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 SLC6A18Q96N87 628 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ARID3AQ99856 593 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 DNAI2Q9GZS0 605 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 RSPH9Q9H1X1 276 aaPredicted RBP12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 EBF2Q9HAK2 575 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 CYP3A43Q9HB55 503 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 ABCB8Q9NUT2 735 aa12.14□□□□□ -0.47
CLSTN3-209ENST00000539982 MGAQ8IWI9 3026 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 PVALEFA0A1B0GWK0 134 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 FAM47DPA6NHR8 397 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 ERVH48-1M5A8F1 160 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 BRINP1O60477 761 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 HLA-DRAP01903 254 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 PABPC1P11940 636 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 CD38P28907 300 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 ARRB1P49407 418 aaPredicted RBP12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 HARS2P49590 506 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 CXADRP78310 365 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 CCDC173Q0VFZ6 552 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 MBLAC2Q68D91 279 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 ZC3H3Q8IXZ2 948 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 WBP1Q96G27 269 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 PABPC3Q9H361 631 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 GDF3Q9NR23 364 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 AASDHPPTQ9NRN7 309 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 FBXL12Q9NXK8 326 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 GGA2Q9UJY4 613 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 STOML2Q9UJZ1 356 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 MYLKQ15746 1914 aa12.13□□□□□ -0.47
CLSTN3-209ENST00000539982 A0A1W2PR77 199 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 LRRC72A6NJI9 287 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 CYSRT1A8MQ03 144 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 RNASEH1O60930 286 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 CKMT2P17540 419 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 POLR2EP19388 210 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 SYT1P21579 422 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 GLDCP23378 1020 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 PIK3CAP42336 1068 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 RXRGP48443 463 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 NASPP49321 788 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 BNIP3Q12983 259 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms