RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ABCG1P45844 678 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 FLOT2Q14254 428 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 PCLAFQ15004 111 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 FKBP1CQ5VVH2 108 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 TMC7Q7Z402 723 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 MAVSQ7Z434 540 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 TRIM50Q86XT4 487 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SCUBE3Q8IX30 993 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 C12orf29Q8N999 325 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CEP70Q8NHQ1 597 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 NCSTNQ92542 709 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 PRPF18Q99633 342 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 STN1Q9H668 368 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 COG4Q9H9E3 785 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 RHBDL2Q9NX52 303 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 GALNT8Q9NY28 637 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SSX2IPQ9Y2D8 614 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 PSAT1Q9Y617 370 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SF3B1O75533 1304 aaKnown RBP eCLIP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 MYOCOSA0A1B0GUC4 107 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 ITGA2BP08514 1039 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 VDRP11473 427 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 ENO3P13929 434 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 IL4RP24394 825 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 MLH1P40692 756 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 RGS2P41220 211 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 GARSP41250 739 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 RPL5P46777 297 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 KLF10Q13118 480 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 GRM1Q13255 1194 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 PPP2R5DQ14738 602 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 TLR1Q15399 786 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CCDC14Q49A88 953 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 POTEAQ6S8J7 498 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 C1orf127Q8N9H9 656 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CCNYQ8ND76 341 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SREK1Q8WXA9 508 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 USP13Q92995 863 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 LENG8Q96PV6 779 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SERPINI1Q99574 410 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 COPS7BQ9H9Q2 264 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 FAM49BQ9NUQ9 324 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SRGAP2BP0DMP2 458 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 TCN1P20061 433 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 TCF7P36402 384 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 NDST1P52848 882 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 PKNOX1P55347 436 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 COG7P83436 770 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 TMEM132BQ14DG7 1078 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 TBC1D25Q3MII6 688 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 HSP90AA5PQ58FG0 334 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 SH2D4BQ5SQS7 431 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 PGM2L1Q6PCE3 622 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 FAM43BQ6ZT52 329 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 LCA5Q86VQ0 697 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 ABTB1Q969K4 478 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 CDRT15Q96T59 188 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 TEX13BQ9BXU2 312 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 OXCT2Q9BYC2 517 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 MAGEB5Q9BZ81 275 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 DNAJC28Q9NX36 388 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 COPG2Q9UBF2 871 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 SIX4Q9UIU6 781 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 FZD1Q9UP38 647 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 ENDOD1O94919 500 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 FAM200BP0CF97 657 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 GOLGA7BQ2TAP0 167 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 ZNF534Q76KX8 674 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 SNX32Q86XE0 403 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 GMLQ99445 158 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 PICK1Q9NRD5 415 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 PSMD13Q9UNM6 376 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 CDY2AQ9Y6F7 541 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 CDY1Q9Y6F8 540 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 UBR3Q6ZT12 1888 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 SYNJ2BP-COX16A0A087WUM0 186 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 FAM189A1O60320 539 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 CILPO75339 1184 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 MYL4P12829 197 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 GTF2A2P52657 109 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 ATXN1P54253 815 aaKnown RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 STILQ15468 1287 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 IER5Q5VY09 327 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 UGT2A3Q6UWM9 527 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 CYP4V2Q6ZWL3 525 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 ZNF781Q8N8C0 355 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 ACMSDQ8TDX5 336 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 TRAPPC12Q8WVT3 735 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 LENG1Q96BZ8 264 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 HPDLQ96IR7 371 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 BTBD9Q96Q07 612 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 SORT1Q99523 831 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 NIFKQ9BYG3 293 aaKnown RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 WDR55Q9H6Y2 383 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-237ENST00000539504 COX16Q9P0S2 106 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 AP4B1Q9Y6B7 739 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 AK5Q9Y6K8 562 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 EP400Q96L91 3159 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 LY75O60449 1722 aa11.56□□□□□ -0.56
SYNE1-237ENST00000539504 LACTBL1A8MY62 500 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms