RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 NRF1Q16656 503 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 TTC39BQ5VTQ0 682 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 IRAK1BP1Q5VVH5 260 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 OSTM1Q86WC4 334 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 LACC1Q8IV20 430 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 CCDC60Q8IWA6 550 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 CTAGE3PQ8IX95 158 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 CPNE9Q8IYJ1 553 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 ZNF786Q8N393 782 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 KCNH5Q8NCM2 988 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 BHLHE22Q8NFJ8 381 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 SLC20A1Q8WUM9 679 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 TFAP2CQ92754 450 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 TOP1MTQ969P6 601 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 SERAC1Q96JX3 654 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 CDK5RAP1Q96SZ6 601 aaKnown RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 AKIP1Q9NQ31 210 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 SCUBE2Q9NQ36 999 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 PKD2L1Q9P0L9 805 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 COPG2Q9UBF2 871 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 PI4KBQ9UBF8 816 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 SPATA31A6Q5VVP1 1343 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 POTEMA6NI47 508 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 E7ESA3 106 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 FOXN3O00409 490 aaPredicted RBP12.75□□□□□ -0.37
USP3-203ENST00000538686 CCRL2O00421 344 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 KRT37O76014 449 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 CDH1P12830 882 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 ME2P23368 584 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 MAPK4P31152 587 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 RRM2P31350 389 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 STAT3P40763 770 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 OPRL1P41146 370 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 ZNF132P52740 706 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 STILQ15468 1287 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 SMU1Q2TAY7 513 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 INAVAQ3KP66 663 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 PIGGQ5H8A4 983 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 RALGPS2Q86X27 583 aaPredicted RBP12.75□□□□□ -0.37
USP3-203ENST00000538686 CLIP4Q8N3C7 705 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 SLC4A11Q8NBS3 891 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 ABHD11Q8NFV4 315 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 ERLEC1Q96DZ1 483 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 VMP1Q96GC9 406 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 MAGED4Q96JG8 741 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 CDHR1Q96JP9 859 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 ADAM33Q9BZ11 813 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 GLT8D2Q9H1C3 349 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 C8orf4Q9NR00 106 aa12.75□□□□□ -0.37
USP3-203ENST00000538686 DNMT3BQ9UBC3 853 aaKnown RBP12.75□□□□□ -0.37
USP3-203ENST00000538686 TSPY2A6NKD2 308 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 A6NL46 340 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 A8MU76 341 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 FAM25AB3EWG3 89 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 FAM25CB3EWG5 89 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 FAM25GB3EWG6 89 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 AKAP10O43572 662 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 CPNE6O95741 557 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 BPGMP07738 259 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 TSPY3P0CV98 308 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 TSPY8P0CW00 308 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 PROZP22891 400 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 BDNFP23560 247 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 COPZ1P61923 177 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 MYL7Q01449 175 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 TSPY1Q01534 308 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 DLG2Q15700 870 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 IQSEC1Q6DN90 963 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 KIAA0408Q6ZU52 694 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 REXO1Q8N1G1 1221 aaKnown RBP12.74□□□□□ -0.37
USP3-203ENST00000538686 PARP8Q8N3A8 854 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 UBR7Q8N806 425 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 KYQ8NBH2 561 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 OR13F1Q8NGS4 319 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SDR42E1Q8WUS8 393 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 VPS33AQ96AX1 596 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 CIB1Q99828 191 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SLA2Q9H6Q3 261 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 PCDH9Q9HC56 1237 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SNTG2Q9NY99 539 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SERPINB13Q9UIV8 391 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 UBE4BO95155 1302 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 TEX51A0A1B0GUA7 166 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 ARHGAP33O14559 1287 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SNPHO15079 494 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SLC22A2O15244 555 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 LIASO43766 372 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 MYCP01106 439 aaPredicted RBP12.74□□□□□ -0.37
USP3-203ENST00000538686 FDX1P10109 184 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 C7P10643 843 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 YBX3P16989 372 aaKnown RBP eCLIP12.74□□□□□ -0.373e-6■■■□□ 16.3
USP3-203ENST00000538686 JUNBP17275 347 aaPredicted RBP12.74□□□□□ -0.37
USP3-203ENST00000538686 SSTR1P30872 391 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 NR4A2P43354 598 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 NME5P56597 212 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 CETN1Q12798 172 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 NME3Q13232 169 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 TRIM28Q13263 835 aaKnown RBP12.74□□□□□ -0.37
USP3-203ENST00000538686 COL19A1Q14993 1142 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SNX17Q15036 470 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms