RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 DMTF1Q9Y222 760 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 CYP46A1Q9Y6A2 500 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 TCHHQ07283 1943 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 WNT7AO00755 349 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 GREM1O60565 184 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 CDC45O75419 566 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 ZDHHC11BP0C7U3 371 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 PTPN1P18031 435 aaKnown RBP9.62□□□□□ -0.87
USP28-205ENST00000537706 CD97P48960 835 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 SLC5A3P53794 718 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 FYB2Q5VWT5 728 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 ZNF787Q6DD87 383 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 SND1Q7KZF4 910 aaKnown RBP eCLIP9.62□□□□□ -0.87
USP28-205ENST00000537706 SPATS2Q86XZ4 545 aaKnown RBP9.62□□□□□ -0.87
USP28-205ENST00000537706 OR6B3Q8NGW1 331 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 DDI1Q8WTU0 396 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 FUCA2Q9BTY2 467 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 STRADBQ9C0K7 418 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 TMEM245Q9H330 911 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 ACSL6Q9UKU0 697 aa9.62□□□□□ -0.87
USP28-205ENST00000537706 A1L4Q6 167 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 PLD2O14939 933 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 LDHAP00338 332 aaKnown RBP9.61□□□□□ -0.87
USP28-205ENST00000537706 DCTP40126 519 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 POLE2P56282 527 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 ST8SIA6P61647 398 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 Q6ZNB5 142 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 SLC25A45Q8N413 288 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 FBXO39Q8N4B4 442 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 ARRDC3Q96B67 414 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 KLHDC7BQ96G42 594 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 CDK5RAP3Q96JB5 506 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 ZNF518BQ9C0D4 1074 aa9.61□□□□□ -0.87
USP28-205ENST00000537706 DMAP1Q9NPF5 467 aaPredicted RBP9.61□□□□□ -0.87
USP28-205ENST00000537706 UBE4BO95155 1302 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 SCN1AP35498 2009 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 C2CD3Q4AC94 2353 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3DA0A087WVF3 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3IA0A087WXS9 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3EA0A087X179 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3KA0A087X1G2 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 A0A1W2PP55 124 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 CPED1A4D0V7 1026 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3FA6NER0 549 aaPredicted RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3LB9A6J9 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 RTN2O75298 545 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 FAM163BP0C2L3 166 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3HP0C7X1 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TGM2P21980 687 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 ZRSR1Q15695 479 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 KMT5BQ4FZB7 885 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3GQ6DHY5 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3CQ6IPX1 549 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 CHST9Q7L1S5 443 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 EFL1Q7Z2Z2 1120 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 MAMDC2Q7Z304 686 aaPredicted RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 TBC1D3Q8IZP1 549 aaPredicted RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 EFCAB3Q8N7B9 438 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 ZNF366Q8N895 744 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 SYT2Q8N9I0 419 aaPredicted RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 OR14C36Q8NHC7 312 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 KBTBD7Q8WVZ9 684 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 GLMNQ92990 594 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 HPDLQ96IR7 371 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 CDK5RAP1Q96SZ6 601 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 RSPH9Q9H1X1 276 aaPredicted RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 NEUROG2Q9H2A3 272 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 EBF2Q9HAK2 575 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 KLHL11Q9NVR0 708 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 DKK3Q9UBP4 350 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 MGAQ8IWI9 3026 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 ABCA12Q86UK0 2595 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 PRPF6O94906 941 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 TNNC2P02585 160 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 RPIAP49247 311 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 COG7P83436 770 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 SPIDRQ14159 915 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TGIF1Q15583 401 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 TTC38Q5R3I4 469 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 SLC39A4Q6P5W5 647 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 KLHDC10Q6PID8 442 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 ZC3H18Q86VM9 953 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 HEATR4Q86WZ0 1026 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 BRSK2Q8IWQ3 736 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 RBBP8NLQ8NC74 664 aaPredicted RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 SCAMP5Q8TAC9 235 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 CYB5D2Q8WUJ1 264 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 HEXIM2Q96MH2 286 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 CATSPER2Q96P56 530 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 SRRTQ9BXP5 876 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 SYNDIG1Q9H7V2 258 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 PARVGQ9HBI0 331 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 IL37Q9NZH6 218 aa9.6□□□□□ -0.87
USP28-205ENST00000537706 NOL7Q9UMY1 257 aaKnown RBP9.6□□□□□ -0.87
USP28-205ENST00000537706 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 A0A1W2PNU3 283 aaPredicted RBP9.59□□□□□ -0.87
USP28-205ENST00000537706 ANKRD63C9JTQ0 380 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 WNT9AO14904 365 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 MID1O15344 667 aa9.59□□□□□ -0.87
USP28-205ENST00000537706 KRT18P05783 430 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms