RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ARHGAP26Q9UNA1 814 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 STYXL1Q9Y6J8 313 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 PCDH15Q96QU1 1955 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 A0A0A6YYK5 440 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 FAM221BA6H8Z2 402 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 BHMG1C9JSJ3 638 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 ANKRD63C9JTQ0 380 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 TAF4O00268 1085 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 TULP2O00295 520 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 TRIM66O15016 1216 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 SHOX2O60902 331 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 IL18RAPO95256 599 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 CALCAP01258 141 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 P2RY2P41231 377 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 MARCKSL1P49006 195 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 ACOT2P49753 483 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 GTF2BQ00403 316 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 ZNF211Q13398 564 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 UAP1Q16222 522 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 CRY1Q16526 586 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 DDR2Q16832 855 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 C2orf27AQ580R0 203 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 INTS6LQ5JSJ4 861 aaKnown RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 SPDYCQ5MJ68 293 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 PEAR1Q5VY43 1037 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 CBWD2Q8IUF1 395 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 EFCAB13Q8IY85 973 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 TMEM86AQ8N2M4 240 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 RASGEF1CQ8N431 466 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 CCDC33Q8N5R6 958 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 OR2W6PQ8NHA6 318 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 TAF4BQ92750 862 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 SEMA4DQ92854 862 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 CYP2S1Q96SQ9 504 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 PKMYT1Q99640 499 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 UBE2TQ9NPD8 197 aaPredicted RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 SEPT11Q9NVA2 429 aaKnown RBP8.62□□□□□ -1.03
NEDD8-207ENST00000533242 HSPBP1Q9NZL4 362 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 KLK13Q9UKR3 277 aa8.62□□□□□ -1.03
NEDD8-207ENST00000533242 CACNA1GO43497 2377 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 ASCC3Q8N3C0 2202 aaKnown RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 H0Y626 953 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 PGRMC1O00264 195 aaKnown RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 TULP1O00294 542 aaPredicted RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 CES2O00748 559 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 TTI1O43156 1089 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 MAP3K13O43283 966 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 ATMINO43313 823 aaPredicted RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 TRIM16O95361 564 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 ENGP17813 658 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 CYP2F1P24903 491 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 RDXP35241 583 aaKnown RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 HOXD12P35452 270 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 VAMP7P51809 220 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 SEMA3BQ13214 749 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 GAB4Q2WGN9 574 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 SLC23A3Q6PIS1 610 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 ARL14EPQ8N8R7 260 aaPredicted RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 FAM76AQ8TAV0 307 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 WHAMMQ8TF30 809 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 RFFLQ8WZ73 363 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 SAAL1Q96ER3 474 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 KREMEN1Q96MU8 473 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 PCDHB18PQ96TA0 734 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 LINC00597Q9H2U6 94 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 DDX43Q9NXZ2 648 aaKnown RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 AGO2Q9UKV8 859 aaKnown RBP8.61□□□□□ -1.03
NEDD8-207ENST00000533242 PI4KAP42356 2102 aa8.61□□□□□ -1.03
NEDD8-207ENST00000533242 SPAARA0A1B0GVQ0 90 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 KRIT1O00522 736 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TMEM253P0C7T8 217 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 CHRM1P11229 460 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 MAGEA11P43364 429 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 MAPK8P45983 427 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 IRAK1P51617 712 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 HNRNPDQ14103 355 aaKnown RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 EOGTQ5NDL2 527 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TMEM92Q6UXU6 159 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 LEKR1Q6ZMV7 388 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 VPS36Q86VN1 386 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 KRT35Q92764 455 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 FUBP3Q96I24 572 aaKnown RBP eCLIP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 PBKQ96KB5 322 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 CEP295NLQ96MC4 621 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TRIM51Q9BSJ1 452 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 ST6GALNAC4Q9H4F1 302 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 POLMQ9NP87 494 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 MBD1Q9UIS9 605 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 INTUQ9ULD6 942 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 C2orf78A6NCI8 922 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 DAPK3O43293 454 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 HUS1O60921 280 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 KLF8O95600 359 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 FGGP02679 453 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 HNRNPLP14866 589 aaKnown RBP eCLIP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 CHRNB2P17787 502 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 HDCP19113 662 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 ANXA13P27216 316 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 EIF2DP41214 584 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms