RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 Q6ZWC4 215 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 DENND1CQ8IV53 801 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 Q8N9P0 234 aaPredicted RBP4.6□□□□□ -1.67
CD44-235ENST00000532339 PNLDC1Q8NA58 520 aaKnown RBP4.6□□□□□ -1.67
CD44-235ENST00000532339 ABHD11Q8NFV4 315 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 PPP1R35Q8TAP8 253 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 OSCP1Q8WVF1 389 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 SOCS4Q8WXH5 440 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 TTC17Q96AE7 1141 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 DAZAP1Q96EP5 407 aaKnown RBP4.6□□□□□ -1.67
CD44-235ENST00000532339 MESP1Q9BRJ9 268 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 MYH16Q9H6N6 1097 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 GGA3Q9NZ52 723 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 RTL1A6NKG5 1358 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 A0A1W2PP64 1363 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 ANO9A1A5B4 782 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 PI4K2BG5E9Z4 385 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 H7C1Q1 480 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 hCG_1984214I3L0E3 225 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 TP73O15350 636 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 PRKCBP05771 671 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 RHCEP18577 417 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 NEK3P51956 506 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 UBXN2AP68543 259 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 RHDQ02161 417 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 KRT17Q04695 432 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 TJP1Q07157 1748 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 KLF9Q13886 244 aaPredicted RBP4.59□□□□□ -1.67
CD44-235ENST00000532339 BRD3Q15059 726 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 SAFBQ15424 915 aaKnown RBP eCLIP4.59□□□□□ -1.67
CD44-235ENST00000532339 COBLL1Q53SF7 1204 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 CEP78Q5JTW2 689 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 GORABQ5T7V8 394 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 DEPDC1Q5TB30 811 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 LMBRD2Q68DH5 695 aaPredicted RBP4.59□□□□□ -1.67
CD44-235ENST00000532339 SLC9A4Q6AI14 798 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 CATSPERGQ6ZRH7 1159 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 DAAM2Q86T65 1068 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 CHSY1Q86X52 802 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 ZNF366Q8N895 744 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 CYP2W1Q8TAV3 490 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 DENND1AQ8TEH3 1009 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 MACROD1Q9BQ69 325 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 SH2D3AQ9BRG2 576 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 QTRT1Q9BXR0 403 aaKnown RBP4.59□□□□□ -1.67
CD44-235ENST00000532339 CXorf36Q9H7Y0 433 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 CENPJQ9HC77 1338 aaPredicted RBP4.59□□□□□ -1.67
CD44-235ENST00000532339 TRMT13Q9NUP7 481 aaKnown RBP4.59□□□□□ -1.67
CD44-235ENST00000532339 GABRQQ9UN88 632 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 MRPS17Q9Y2R5 130 aaKnown RBP4.59□□□□□ -1.67
CD44-235ENST00000532339 COMMD10Q9Y6G5 202 aa4.59□□□□□ -1.67
CD44-235ENST00000532339 ACACBO00763 2458 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 PROB1E7EW31 1015 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 FAM227AF5H4B4 570 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 ADAMTS3O15072 1205 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 PMM2O15305 246 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 EIF3JO75822 258 aaKnown RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 TUSC2O75896 110 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 ZBED1O96006 694 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 TFRCP02786 760 aaKnown RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 HRGP04196 525 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 CSF1RP07333 972 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 NBPF7P0C2Y1 421 aaPredicted RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 HTR1BP28222 390 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 CTGFP29279 349 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 DGKEP52429 567 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 PICALMQ13492 652 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 ETFDHQ16134 617 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 AAK1Q2M2I8 961 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 SUPT20HL1Q3ZLR7 823 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 CERKLQ49MI3 558 aaPredicted RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 ZNF783Q6ZMS7 281 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 SRGAP1Q7Z6B7 1085 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 GAS2L3Q86XJ1 694 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 ZNF280BQ86YH2 543 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 SMC5Q8IY18 1101 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 GALNT16Q8N428 558 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 KBTBD7Q8WVZ9 684 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 PPM1EQ8WY54 764 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 FCRL4Q96PJ5 515 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 DPCDQ9BVM2 203 aaPredicted RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 TRIM54Q9BYV2 358 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 TMEM60Q9H2L4 133 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 FAM50BQ9Y247 325 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 TBC1D30Q9Y2I9 924 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 ZBTB1Q9Y2K1 713 aa4.58□□□□□ -1.68
CD44-235ENST00000532339 PTPRZ1P23471 2315 aaPredicted RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 ZFHX2Q9C0A1 2572 aaPredicted RBP4.58□□□□□ -1.68
CD44-235ENST00000532339 EVC2Q86UK5 1308 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 A0A087WWL8 130 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 A0A1W2PPL8 197 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 POC1B-GALNT4F8VUJ3 575 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 MOSPD3O75425 235 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 UBXN7O94888 489 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 BMP15O95972 392 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 LDHAP00338 332 aaKnown RBP4.57□□□□□ -1.68
CD44-235ENST00000532339 CYP19A1P11511 503 aaPredicted RBP4.57□□□□□ -1.68
CD44-235ENST00000532339 RPS12P25398 132 aaKnown RBP4.57□□□□□ -1.68
CD44-235ENST00000532339 ARFIP2P53365 341 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 L1TD1Q5T7N2 865 aaKnown RBP4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms