RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 PAGR1Q9BTK6 254 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 ELOVL1Q9BW60 279 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 TRIM2Q9C040 744 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 ELAC1Q9H777 363 aaKnown RBP4.33□□□□□ -1.72
CD44-233ENST00000531141 MLXIPQ9HAP2 919 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 ERVK-5Q9HDB9 667 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 ADARB2Q9NS39 739 aaKnown RBP4.33□□□□□ -1.72
CD44-233ENST00000531141 LIN7CQ9NUP9 197 aaKnown RBP4.33□□□□□ -1.72
CD44-233ENST00000531141 TMLHEQ9NVH6 421 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 NDUFAF4Q9P032 175 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 DAPP1Q9UN19 280 aa4.33□□□□□ -1.72
CD44-233ENST00000531141 SPATA31A5Q5VU36 1347 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 SPATA31A7Q8IWB4 1347 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 WDR17Q8IZU2 1322 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 M0QYT0 321 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 PPP6CO00743 305 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 DSCR3O14972 297 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 TPD52L2O43399 206 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 USP12O75317 370 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 CYP3A4P08684 503 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 CST5P28325 142 aaPredicted RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 GRK5P34947 590 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 MCM2P49736 904 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 AGTR2P50052 363 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 FAM3BP58499 235 aaPredicted RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 RPL15P61313 204 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 RBM6P78332 1123 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 RNASELQ05823 741 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 DMWDQ09019 674 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 GAB1Q13480 694 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 EZH2Q15910 746 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 ZNF569Q5MCW4 686 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 DGAT2L7PQ6IED9 249 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 MIS18BP1Q6P0N0 1132 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 TMEM88Q6PEY1 159 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 NEK8Q86SG6 692 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 GALNT15Q8N3T1 639 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 SRFBP1Q8NEF9 429 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 SCAMP5Q8TAC9 235 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 SLC2A12Q8TD20 617 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 THAP4Q8WY91 577 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 TRMT61AQ96FX7 289 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 FCRL5Q96RD9 977 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 ISCA1Q9BUE6 129 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 DDX23Q9BUQ8 820 aaKnown RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 PRDM16Q9HAZ2 1276 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 SAYSD1Q9NPB0 183 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 PDGFCQ9NRA1 345 aa4.32□□□□□ -1.72
CD44-233ENST00000531141 TRPC5Q9UL62 973 aaPredicted RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 MORC2Q9Y6X9 1032 aaPredicted RBP4.32□□□□□ -1.72
CD44-233ENST00000531141 EMSYQ7Z589 1322 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3DA0A087WVF3 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3IA0A087WXS9 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3EA0A087X179 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3KA0A087X1G2 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3BA6NDS4 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3FA6NER0 549 aaPredicted RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 CGB1A6NKQ9 187 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3LB9A6J9 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 IPO5O00410 1097 aaKnown RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 INPPL1O15357 1258 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 IRAK2O43187 625 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 SGPL1O95470 568 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 CELA2AP08217 269 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3HP0C7X1 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 SFPQP23246 707 aaKnown RBP eCLIP4.31□□□□□ -1.72
CD44-233ENST00000531141 SERPINA4P29622 427 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 STAT6P42226 847 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 MRPS21P82921 87 aaKnown RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 HSF1Q00613 529 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 SRSF4Q08170 494 aaKnown RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 RPS6KA2Q15349 733 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 CCDC142Q17RM4 750 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 CEP78Q5JTW2 689 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 MEX3CQ5U5Q3 659 aaKnown RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3GQ6DHY5 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3CQ6IPX1 549 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 JMJD6Q6NYC1 403 aaPredicted RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 SLC39A5Q6ZMH5 540 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 RFX6Q8HWS3 928 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 UEVLDQ8IX04 471 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 SRRM1Q8IYB3 904 aaKnown RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 TBC1D3Q8IZP1 549 aaPredicted RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 ZFPM2Q8WW38 1151 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 MAP4K1Q92918 833 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 C3orf49Q96BT1 292 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 HTATIP2Q9BUP3 242 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 MECRQ9BV79 373 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 SORBS1Q9BX66 1292 aaKnown RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 BRD8Q9H0E9 1235 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 VPS16Q9H269 839 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 NRIP3Q9NQ35 241 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 RAB21Q9UL25 225 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 RIPOR2Q9Y4F9 1068 aa4.31□□□□□ -1.72
CD44-233ENST00000531141 HEMK1Q9Y5R4 338 aaPredicted RBP4.31□□□□□ -1.72
CD44-233ENST00000531141 HMX3A6NHT5 357 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 C16orf96A6NNT2 1141 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 H0Y3Z8 333 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 RRHO14718 337 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms