RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SNX10Q9Y5X0 201 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 A0A1W2PQH9 124 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 E7EVH7 732 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 METTL18O95568 372 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 IVLP07476 585 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 MMP13P45452 471 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 GLUD2P49448 558 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 PDK1Q15118 436 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 FAXCQ5TGI0 409 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 LRRC31Q6UY01 552 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 PPP1R21Q6ZMI0 780 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 TAS1R1Q7RTX1 841 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 NETO2Q8NC67 525 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 PYROXD1Q8WU10 500 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 OSER1Q9NX31 292 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 CTNNAL1Q9UBT7 734 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 VWA8A3KMH1 1905 aa21.37■■□□□ 1.01
VPS28-209ENST00000528142 EFEMP2O95967 443 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 GPR17Q13304 367 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 MON1AQ86VX9 555 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 TP53INP2Q8IXH6 220 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 STKLD1Q8NE28 680 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 CASP10Q92851 521 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 FRMD8Q9BZ67 464 aaPredicted RBP21.36■■□□□ 1.01
VPS28-209ENST00000528142 FBXO44Q9H4M3 255 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 C11orf49Q9H6J7 331 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 VPS37BQ9H9H4 285 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 ATP11BQ9Y2G3 1177 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 NR2E3Q9Y5X4 410 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 RAD54BQ9Y620 910 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 A0A0A0MRY4 1105 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 LRIG2O94898 1065 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 VNN2O95498 520 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 GCAP28676 217 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 USP46P62068 366 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 BBS9Q3SYG4 887 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 BRMS1LQ5PSV4 323 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 SYCP2LQ5T4T6 812 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 EXOC3L1Q86VI1 746 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 FBXO36Q8NEA4 188 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 RNF34Q969K3 372 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 SPATA13Q96N96 652 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 EPAS1Q99814 870 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 PRDM12Q9H4Q4 367 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 CNOT10Q9H9A5 744 aaKnown RBP21.36■■□□□ 1.01
VPS28-209ENST00000528142 SFMBT1Q9UHJ3 866 aa21.36■■□□□ 1.01
VPS28-209ENST00000528142 FAM92AA1XBS5 289 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 MTMR11A4FU01 709 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 H7C4K7 107 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 CDH16O75309 829 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 TSHRP16473 764 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 ANKRD20A2Q5SQ80 823 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 ANKRD20A1Q5TYW2 823 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 ANKRD20A3Q5VUR7 823 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 PDZD4Q76G19 769 aaPredicted RBP21.35■■□□□ 1.01
VPS28-209ENST00000528142 CYP4X1Q8N118 509 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 VPS52Q8N1B4 723 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 NPWQ8N729 165 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 ATP11CQ8NB49 1132 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 MCUQ8NE86 351 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 P2RY11Q96G91 374 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 HAPLN3Q96S86 360 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 TTPALQ9BTX7 342 aa21.35■■□□□ 1.01
VPS28-209ENST00000528142 PPP1R12AO14974 1030 aaPredicted RBP21.34■■□□□ 1.01
VPS28-209ENST00000528142 ITGB8P26012 769 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 LSP1P33241 339 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 ARPP19P56211 112 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 SMARCB1Q12824 385 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 MTM1Q13496 603 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 SEMA5AQ13591 1074 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 IKBKEQ14164 716 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 CNKSR3Q6P9H4 555 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 LEKR1Q6ZMV7 388 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 RNF19BQ6ZMZ0 732 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 ANKS3Q6ZW76 656 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 CAND1Q86VP6 1230 aaKnown RBP21.34■■□□□ 1.01
VPS28-209ENST00000528142 TDRPQ86YL5 185 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 IGDCC3Q8IVU1 814 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 AGGF1Q8N302 714 aaeCLIP21.34■■□□□ 1.01
VPS28-209ENST00000528142 SPPL2BQ8TCT7 592 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 OXCT2Q9BYC2 517 aaPredicted RBP21.34■■□□□ 1.01
VPS28-209ENST00000528142 CRISPLD1Q9H336 500 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 NEU3Q9UQ49 428 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 TEX264Q9Y6I9 313 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 EXOC1LA0A1B0GW35 172 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 ERICH4A6NGS2 130 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 MSI1O43347 362 aaKnown RBP21.34■■□□□ 1.01
VPS28-209ENST00000528142 APRTP07741 180 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 CPB1P15086 417 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 TPSB2P20231 275 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 ATP5DP30049 168 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 SSTR1P30872 391 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 ELK3P41970 407 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 AP1B1Q10567 949 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 WASHC5Q12768 1159 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 TPSAB1Q15661 275 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 CCDC38Q502W7 563 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 ARTNQ5T4W7 220 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 MSANTD2Q6P1R3 559 aa21.34■■□□□ 1.01
VPS28-209ENST00000528142 CAPN12Q6ZSI9 719 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms