RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PMS2CLQ68D20 193 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 SMYD5Q6GMV2 418 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TCEAL6Q6IPX3 200 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 MMS22LQ6ZRQ5 1243 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 CEP68Q76N32 757 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 CACNA2D4Q7Z3S7 1137 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 EPS8L1Q8TE68 723 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 IPO4Q8TEX9 1081 aaKnown RBP11.08□□□□□ -0.64
CD44-227ENST00000528086 HMGB4Q8WW32 186 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TCEAL3Q969E4 200 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 FAM149B1Q96BN6 582 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 FAM81BQ96LP2 452 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 PCDHB18PQ96TA0 734 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 STK33Q9BYT3 514 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 RAB6CQ9H0N0 254 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 ARRDC1-AS1Q9H2J1 176 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 SEMA4GQ9NTN9 838 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 ANO10Q9NW15 660 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 ELOVL2Q9NXB9 296 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 TLR6Q9Y2C9 796 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 STON1Q9Y6Q2 735 aa11.08□□□□□ -0.64
CD44-227ENST00000528086 NYNRINQ9P2P1 1898 aaKnown RBP11.08□□□□□ -0.64
CD44-227ENST00000528086 PCDH15Q96QU1 1955 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 ASCC3Q8N3C0 2202 aaKnown RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 LGALS16A8MUM7 142 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 POLR2FP61218 127 aaKnown RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 NOMO3P69849 1222 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 FMO1Q01740 532 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 MYL5Q02045 173 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 PTP4A2Q12974 167 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 ZNF234Q14588 700 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 SYCP1Q15431 976 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 CSRP2Q16527 193 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 STX1AQ16623 288 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 RSPO4Q2I0M5 234 aaPredicted RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 MPPE1Q53F39 396 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 DCAF6Q58WW2 860 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 MS4A13Q5J8X5 152 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 SLC26A9Q7LBE3 791 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 BNIPLQ7Z465 357 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 CFAP52Q8N1V2 620 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 ZNF397Q8NF99 534 aaPredicted RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 OR52K2Q8NGK3 314 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 DDI1Q8WTU0 396 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 CYB5D2Q8WUJ1 264 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 NT5C3BQ969T7 300 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 TMA16Q96EY4 203 aaKnown RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 LOXL4Q96JB6 756 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 MRGPRX1Q96LB2 322 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 HINFPQ9BQA5 517 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 SLC2A11Q9BYW1 496 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 MKRN2Q9H000 416 aaKnown RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 TMEM245Q9H330 911 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 MTG2Q9H4K7 406 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 POPDC2Q9HBU9 364 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 TMPRSS4Q9NRS4 437 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 FAM207AQ9NSI2 230 aaPredicted RBP11.07□□□□□ -0.64
CD44-227ENST00000528086 ASNSD1Q9NWL6 643 aa11.07□□□□□ -0.64
CD44-227ENST00000528086 NCOR2Q9Y618 2525 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 BCLAF3A2AJT9 711 aaKnown RBP11.06□□□□□ -0.64
CD44-227ENST00000528086 PATE3B3GLJ2 98 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 TM4SF5O14894 197 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 TBL1XO60907 577 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 GFPT2O94808 682 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 MBD3O95983 291 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 CYP1A1P04798 512 aaPredicted RBP11.06□□□□□ -0.64
CD44-227ENST00000528086 GLI1P08151 1106 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 HLA-EP13747 358 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 PTGER3P43115 390 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 COPAP53621 1224 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ATXN1P54253 815 aaKnown RBP11.06□□□□□ -0.64
CD44-227ENST00000528086 SLC6A3Q01959 620 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 LMAN2Q12907 356 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 IQCB1Q15051 598 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 FUT11Q495W5 492 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ANO6Q4KMQ2 910 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 NUGGCQ68CJ6 796 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 OR6B2Q6IFH4 312 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 SASS6Q6UVJ0 657 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 PRR23CQ6ZRP0 262 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ANKS1BQ7Z6G8 1248 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.06□□□□□ -0.64
CD44-227ENST00000528086 C14orf80Q86SX3 495 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 XYLT1Q86Y38 959 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ZNF683Q8IZ20 524 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 CHPFQ8IZ52 775 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 AOPEPQ8N6M6 819 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ZNF366Q8N895 744 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 CCDC26Q8TAB7 109 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 MRGPRX3Q96LB0 322 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 SERPINB11Q96P15 392 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 NPY6RQ99463 290 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 SYT11Q9BT88 431 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 NLRC4Q9NPP4 1024 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 TMEM74BQ9NUR3 256 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 ABCB8Q9NUT2 735 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 TMEM59LQ9UK28 342 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 GMEB2Q9UKD1 530 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 SNX10Q9Y5X0 201 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 CACNA1EQ15878 2313 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms