RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SGPL1O95470 568 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 CER1O95813 267 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 FGBP02675 491 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 ENO1P06733 434 aaKnown RBP5.34□□□□□ -1.55
CD44-223ENST00000526553 KLRK1P26718 216 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 HOXD9P28356 352 aaPredicted RBP5.34□□□□□ -1.55
CD44-223ENST00000526553 HOXA7P31268 230 aaPredicted RBP5.34□□□□□ -1.55
CD44-223ENST00000526553 ZNF91Q05481 1191 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 SRSF1Q07955 248 aaKnown RBP eCLIP5.34□□□□□ -1.55
CD44-223ENST00000526553 MTA1Q13330 715 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 AAK1Q2M2I8 961 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 EARS2Q5JPH6 523 aaKnown RBP5.34□□□□□ -1.55
CD44-223ENST00000526553 LRCH2Q5VUJ6 765 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 RINT1Q6NUQ1 792 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 WDR93Q6P2C0 686 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 STYXQ8WUJ0 223 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 EID2BQ96D98 161 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 TRIM2Q9C040 744 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 ERVK-5Q9HDB9 667 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 OBP2BQ9NPH6 170 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 PLCB1Q9NQ66 1216 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 MTMR4Q9NYA4 1195 aa5.34□□□□□ -1.55
CD44-223ENST00000526553 EMSYQ7Z589 1322 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 SYT5O00445 386 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 TPD52L2O43399 206 aaKnown RBP5.33□□□□□ -1.56
CD44-223ENST00000526553 DNPH1O43598 174 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 ST6GAL1P15907 406 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 TFEBP19484 476 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 SOX2P48431 317 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 TLE3Q04726 772 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 STIM1Q13586 685 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 MORC3Q14149 939 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 ZACNQ401N2 412 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 TRIM60Q495X7 471 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 SHC4Q6S5L8 630 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 MRPL10Q7Z7H8 261 aaKnown RBP5.33□□□□□ -1.56
CD44-223ENST00000526553 SPICE1Q8N0Z3 855 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 WIPF2Q8TF74 440 aaPredicted RBP5.33□□□□□ -1.56
CD44-223ENST00000526553 MCRS1Q96EZ8 462 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 TRMT61AQ96FX7 289 aaKnown RBP5.33□□□□□ -1.56
CD44-223ENST00000526553 CRB3Q9BUF7 120 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 SPRTNQ9H040 489 aaPredicted RBP5.33□□□□□ -1.56
CD44-223ENST00000526553 MYH16Q9H6N6 1097 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 ELOVL5Q9NYP7 299 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 ZBTB1Q9Y2K1 713 aa5.33□□□□□ -1.56
CD44-223ENST00000526553 SLC22A23A1A5C7 686 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 C3orf70A6NLC5 250 aaPredicted RBP5.32□□□□□ -1.56
CD44-223ENST00000526553 LGALS16A8MUM7 142 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 AKR1A1P14550 325 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 IGFBP2P18065 325 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 PDIA3P30101 505 aaKnown RBP5.32□□□□□ -1.56
CD44-223ENST00000526553 AKT1P31749 480 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 PLCD1P51178 756 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 ICA1Q05084 483 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 LAMB3Q13751 1172 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 RABEP1Q15276 862 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 PUM3Q15397 648 aaKnown RBP5.32□□□□□ -1.56
CD44-223ENST00000526553 PFKFB4Q16877 469 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 ZNF474Q6S9Z5 364 aaPredicted RBP5.32□□□□□ -1.56
CD44-223ENST00000526553 SLC39A5Q6ZMH5 540 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 ANKRD13BQ86YJ7 626 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 RHPN2Q8IUC4 686 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 NANOGP1Q8N7R0 232 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 ADPRHL1Q8NDY3 354 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 SRFBP1Q8NEF9 429 aaKnown RBP5.32□□□□□ -1.56
CD44-223ENST00000526553 ZFPM2Q8WW38 1151 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 REXO5Q96IC2 774 aaKnown RBP5.32□□□□□ -1.56
CD44-223ENST00000526553 GPR78Q96P69 363 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 KATNAL1Q9BW62 490 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 TMEM184CQ9NVA4 438 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 B3GNT3Q9Y2A9 372 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 RIPOR2Q9Y4F9 1068 aa5.32□□□□□ -1.56
CD44-223ENST00000526553 ZNF521Q96K83 1311 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 PPP6R2O75170 966 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 PEX14O75381 377 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 TNFRSF6BO95407 300 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 ALDOAP04075 364 aaKnown RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 RFPL3SP0C7P2 107 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 CPA2P48052 419 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 POLE2P56282 527 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 RPL15P61313 204 aaKnown RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 GALNT1Q10472 559 aaPredicted RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 RBMS2Q15434 407 aaKnown RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 ANXA2RQ3ZCQ2 193 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 GORABQ5T7V8 394 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 ANKRD40Q6AI12 368 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 C1orf228Q6PIY5 440 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 FAM57BQ71RH2 274 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 PIP4P1Q86T03 277 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 MYLK4Q86YV6 388 aaPredicted RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 MORC4Q8TE76 937 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 KAT2BQ92831 832 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 ZNF48Q96MX3 618 aaPredicted RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 FCRL4Q96PJ5 515 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 MPHOSPH6Q99547 160 aaKnown RBP5.31□□□□□ -1.56
CD44-223ENST00000526553 PRDM16Q9HAZ2 1276 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 AFG3L2Q9Y4W6 797 aa5.31□□□□□ -1.56
CD44-223ENST00000526553 ZNF335Q9H4Z2 1342 aaPredicted RBP5.3□□□□□ -1.56
CD44-223ENST00000526553 FAM90A18PA6NE21 464 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 FAM90A16PA6NEW6 464 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms