RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 SETBP1Q9Y6X0 1596 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 SETD1AO15047 1707 aaKnown RBP4.44□□□□□ -1.7
CD44-219ENST00000525685 LGALS16A8MUM7 142 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 J3KTA2 159 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 FCHO1O14526 889 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 GCATO75600 419 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 TCEA3O75764 348 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 GLP2RO95838 553 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 CSTBP04080 98 aaKnown RBP4.44□□□□□ -1.7
CD44-219ENST00000525685 SLC5A2P31639 672 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 ABCG1P45844 678 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 TFF2Q03403 129 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 SEMA3BQ13214 749 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 CSHL1Q14406 222 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 ZRSR2Q15696 482 aaKnown RBP4.44□□□□□ -1.7
CD44-219ENST00000525685 CYP1B1Q16678 543 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 ATPAF1Q5TC12 328 aaPredicted RBP4.44□□□□□ -1.7
CD44-219ENST00000525685 RINT1Q6NUQ1 792 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 KIRREL2Q6UWL6 708 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 C16orf71Q8IYS4 520 aaPredicted RBP4.44□□□□□ -1.7
CD44-219ENST00000525685 SUN3Q8TAQ9 357 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 TBC1D5Q92609 795 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 CCDC17Q96LX7 622 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 CINPQ9BW66 212 aaPredicted RBP4.44□□□□□ -1.7
CD44-219ENST00000525685 FSD1LQ9BXM9 530 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 CIPCQ9C0C6 399 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 BRD8Q9H0E9 1235 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 SERGEFQ9UGK8 458 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 VPS51Q9UID3 782 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 ADAMTS13Q76LX8 1427 aa4.44□□□□□ -1.7
CD44-219ENST00000525685 DHX57Q6P158 1386 aaKnown RBP4.43□□□□□ -1.7
CD44-219ENST00000525685 ANKRD30BQ9BXX2 1392 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 PLEKHG1Q9ULL1 1385 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 CPS1P31327 1500 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 A8MVJ9 347 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 SMIM22K7EJ46 135 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 M0R3H8 397 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 CA12O43570 354 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 ASNA1O43681 348 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 JTBO76095 146 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 FGAP02671 866 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 SLC3A2P08195 630 aaKnown RBP4.43□□□□□ -1.7
CD44-219ENST00000525685 CELA2AP08217 269 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 ARP10275 920 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 ADRA1DP25100 572 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 PBX1P40424 430 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 KRTAP10-11P60412 298 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 CCDC15Q0P6D6 951 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 TMEM196Q5HYL7 178 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 ZNF569Q5MCW4 686 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 FAM83BQ5T0W9 1011 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 PAPD7Q5XG87 772 aaKnown RBP4.43□□□□□ -1.7
CD44-219ENST00000525685 SUMO4Q6EEV6 95 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 TLDC1Q6P9B6 456 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 TMEM65Q6PI78 240 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 KLHL17Q6TDP4 642 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 SFTPA1Q8IWL2 248 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 NRSN1Q8IZ57 195 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 MYCT1Q8N699 235 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 SEMA6DQ8NFY4 1073 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 STYXQ8WUJ0 223 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 DDB2Q92466 427 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 LENG8Q96PV6 779 aaPredicted RBP4.43□□□□□ -1.7
CD44-219ENST00000525685 RMDN3Q96TC7 470 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 GDF15Q99988 308 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 MYH16Q9H6N6 1097 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 PTPRHQ9HD43 1115 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 FBXO28Q9NVF7 368 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 IGSF9Q9P2J2 1179 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 VPS4AQ9UN37 437 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 GABRQQ9UN88 632 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 XRN1Q8IZH2 1706 aaKnown RBP4.43□□□□□ -1.7
CD44-219ENST00000525685 ZNF335Q9H4Z2 1342 aaPredicted RBP4.43□□□□□ -1.7
CD44-219ENST00000525685 MYOM2P54296 1465 aa4.43□□□□□ -1.7
CD44-219ENST00000525685 COL15A1P39059 1388 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 ASXL1Q8IXJ9 1541 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.42□□□□□ -1.7
CD44-219ENST00000525685 LINC01548A6NM66 108 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 TARM1B6A8C7 271 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 IFRD1O00458 451 aaPredicted RBP4.42□□□□□ -1.7
CD44-219ENST00000525685 TRIM38O00635 465 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 NPC1O15118 1278 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 SPRY2O43597 315 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 DNPH1O43598 174 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 NBNO60934 754 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 TNFRSF6BO95407 300 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 ITGA2BP08514 1039 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 NPPBP16860 134 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 MMP8P22894 467 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 FPR3P25089 353 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 POLE2P56282 527 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 CYP4F2P78329 520 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 HOXA4Q00056 320 aaPredicted RBP4.42□□□□□ -1.7
CD44-219ENST00000525685 CBFBQ13951 182 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 ACOX1Q15067 660 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 RPS6KA2Q15349 733 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 CC2D1BQ5T0F9 858 aaKnown RBP4.42□□□□□ -1.7
CD44-219ENST00000525685 KIAA1614Q5VZ46 1190 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 TRIM72Q6ZMU5 477 aa4.42□□□□□ -1.7
CD44-219ENST00000525685 C1QL2Q7Z5L3 287 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms