RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TRIM44Q96DX7 344 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 IQCDQ96DY2 449 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF1BPQ96EK5 621 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM120BQ96EK7 910 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNF125Q96EQ8 232 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDCA5Q96FF9 252 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BICD1Q96G01 975 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC35A4Q96G79 324 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP95Q96GE4 821 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CALML4Q96GE6 196 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HES6Q96HZ4 224 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 APOPT1Q96IL0 206 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLPTM1LQ96KA5 538 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LYZL4Q96KX0 146 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX22Q96L94 193 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CFAP53Q96M91 514 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 C16orf45Q96MC5 204 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 COG8Q96MW5 612 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 JAKMIP1Q96N16 626 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 WWC2-AS2Q96NR7 200 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSGA13Q96PP4 275 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRAPPC9Q96Q05 1148 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC2A13Q96QE2 648 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB3IPQ96QF0 476 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TWNKQ96RR1 684 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AGAP2Q99490 1192 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 P2RX7Q99572 595 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPF18Q99633 342 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPYCQ99645 322 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MEIS3Q99687 375 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TIMP4Q99727 224 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMOQ99835 787 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CITED2Q99967 270 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 C7orf25Q9BPX7 421 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 REEP2Q9BRK0 252 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AIFM2Q9BRQ8 373 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NTPCRQ9BSD7 190 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM204Q9BSN7 226 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DESI2Q9BSY9 194 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MCMBPQ9BTE3 642 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PI4K2AQ9BTU6 479 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HGH1Q9BTY7 390 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPCDQ9BVM2 203 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADGRE3Q9BY15 652 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACE2Q9BYF1 805 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 AGXT2Q9BYV1 514 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAGEB5Q9BZ81 275 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPH1Q9BZG8 443 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR63Q9BZJ6 419 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD244Q9BZW8 370 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM5Q9C035 493 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF518BQ9C0D4 1074 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TWSG1Q9GZX9 223 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 QRSL1Q9H0R6 528 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIL1Q9H173 461 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 C2orf40Q9H1Z8 148 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PABPC3Q9H361 631 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCTD10Q9H3F6 313 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MS4A5Q9H3V2 200 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTG2Q9H4K7 406 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMARCAD1Q9H4L7 1026 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAF1DQ9H5J8 278 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TASP1Q9H6P5 420 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDCPQ9H6R7 721 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARMT1Q9H993 441 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERVMER34-1Q9H9K5 563 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BCO1Q9HAY6 547 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPNE5Q9HCH3 593 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 A1CFQ9NQ94 594 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PFDN4Q9NQP4 134 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC35C2Q9NQQ7 365 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC177Q9NQR7 707 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS45Q9NRW7 570 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RXFP3Q9NSD7 469 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEMA4GQ9NTN9 838 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM12Q9NTZ6 932 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM74BQ9NUR3 256 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 INTS10Q9NVR2 710 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PNPOQ9NVS9 261 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HIF1ANQ9NWT6 349 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HCFC1R1Q9NWW0 138 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 COMMD8Q9NX08 183 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADPRHL2Q9NX46 363 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R14DQ9NXH3 145 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIDT1Q9NXL6 827 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAS2R10Q9NYW0 307 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EHD3Q9NZN3 535 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM30AQ9NZY2 134 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NDUFAF4Q9P032 175 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 COL20A1Q9P218 1284 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPSF2Q9P2I0 782 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SUCLA2Q9P2R7 463 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPNE7Q9UBL6 633 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EXTL2Q9UBQ6 330 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBA2Q9UBT2 640 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NIPSNAP3AQ9UFN0 247 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D29Q9UFV1 150 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPP7Q9UHL4 492 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRSS50Q9UI38 385 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAI1Q9UI46 699 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms