RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ADRA1BP35368 520 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 DAOAP59103 153 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 AP1B1Q10567 949 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 IFRD2Q12894 506 aaPredicted RBP15.3■□□□□ 0.04
NUP54-217ENST00000514987 RPAINQ86UA6 219 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 THOC1Q96FV9 657 aaKnown RBP15.3■□□□□ 0.04
NUP54-217ENST00000514987 TRIM62Q9BVG3 475 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 SMYD2Q9NRG4 433 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 KRT82Q9NSB4 513 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 FAM105AQ9NUU6 356 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 GIT1Q9Y2X7 761 aa15.3■□□□□ 0.04
NUP54-217ENST00000514987 TSC2P49815 1807 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 ERI2A8K979 691 aaKnown RBP15.29■□□□□ 0.04
NUP54-217ENST00000514987 CLDN5O00501 218 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 DCLK1O15075 740 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 AP1G2O75843 785 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 CSH1P0DML2 217 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 CSH2P0DML3 217 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 MX2P20592 715 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 CYP2B6P20813 491 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 ACAT1P24752 427 aaKnown RBP15.29■□□□□ 0.04
NUP54-217ENST00000514987 MAP3K7CLP57077 242 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 RAB41Q5JT25 222 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 DSTYKQ6XUX3 929 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 KYAT3Q6YP21 454 aaKnown RBP15.29■□□□□ 0.04
NUP54-217ENST00000514987 CLNKQ7Z7G1 428 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 FAM35AQ86V20 835 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 KIF2BQ8N4N8 673 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 CCNYQ8ND76 341 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 PPP1R13LQ8WUF5 828 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 IRGQQ8WZA9 623 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 PTPRN2Q92932 1015 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 ATP2A3Q93084 1043 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 LENG1Q96BZ8 264 aaPredicted RBP15.29■□□□□ 0.04
NUP54-217ENST00000514987 OXNAD1Q96HP4 312 aaPredicted RBP15.29■□□□□ 0.04
NUP54-217ENST00000514987 LGMNQ99538 433 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 SIRPGQ9P1W8 387 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 FBXW11Q9UKB1 542 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 CDY2AQ9Y6F7 541 aa15.29■□□□□ 0.04
NUP54-217ENST00000514987 AP3B1O00203 1094 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 CREB3O43889 395 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 BEST1O76090 585 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 BGNP21810 368 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 NME3Q13232 169 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 FRG1Q14331 258 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 KRT72Q14CN4 511 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 CCL14Q16627 93 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 TAF1BQ53T94 588 aaPredicted RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 FAM91A1Q658Y4 838 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 CASC4Q6P4E1 433 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 C17orf99Q6UX52 265 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 CEP57Q86XR8 500 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 NDUFAF2Q8N183 169 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 SCML4Q8N228 414 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 MPP5Q8N3R9 675 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 RFWD2Q8NHY2 731 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 SLC7A14Q8TBB6 771 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 E2F7Q96AV8 911 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 SMARCD1Q96GM5 515 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 ZFP42Q96MM3 310 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 MAGEB5Q9BZ81 275 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 ULBP1Q9BZM6 244 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 PRDM12Q9H4Q4 367 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 CRTAC1Q9NQ79 661 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 PIGVQ9NUD9 493 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 KCNK4Q9NYG8 393 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 HAO1Q9UJM8 370 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 TRHDEQ9UKU6 1024 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 ST3GAL5Q9UNP4 418 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 STK38LQ9Y2H1 464 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 A0A0G2JND7 137 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 ARHGEF37A1IGU5 675 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 WDR27A2RRH5 827 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 HGSO14964 777 aaPredicted RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 GPR182O15218 404 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 HAUS5O94927 633 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 POLBP06746 335 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 DLDP09622 509 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 T-ENOLP0DO92 83 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 RARBP10826 455 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 TARSP26639 723 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 PTPN4P29074 926 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 NDUFV1P49821 464 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 INHBEP58166 350 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 TPI1P60174 286 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 ZBTB16Q05516 673 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 NIPAL4Q0D2K0 466 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 WASHC5Q12768 1159 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 SEMA3BQ13214 749 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 SPANXN3Q5MJ09 141 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 SYPL2Q5VXT5 272 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 TRMT10BQ6PF06 316 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 MRPL10Q7Z7H8 261 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 MTDHQ86UE4 582 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 METTL23Q86XA0 190 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 NUDCD3Q8IVD9 361 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 PDCD7Q8N8D1 485 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 SH3TC2Q8TF17 1288 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 NDRG1Q92597 394 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 VAT1Q99536 393 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms