RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 MX2P20592 715 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ATP5DP30049 168 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 CCR1P32246 355 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SERPINB6P35237 376 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 FDFT1P37268 417 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 RABGGTBP53611 331 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 GYS2P54840 703 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 TPI1P60174 286 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 PPP2R2AP63151 447 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SEMA5AQ13591 1074 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 USP41Q3LFD5 358 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 RTP2Q5QGT7 225 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 MANEALQ5VSG8 457 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ANKRD22Q5VYY1 191 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 HEATR6Q6AI08 1181 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.64□□□□□ -1.03
RNF4-220ENST00000513578 SCN4BQ8IWT1 228 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 CMTR2Q8IYT2 770 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 CNPY4Q8N129 248 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 PDIK1LQ8N165 341 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 LZTR1Q8N653 840 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SCAMP5Q8TAC9 235 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 OVCA2Q8WZ82 227 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 EDEM1Q92611 657 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 TOP1MTQ969P6 601 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 CENPTQ96BT3 561 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 HDAC11Q96DB2 347 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SLC39A13Q96H72 371 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SPATA13Q96N96 652 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SERPINB11Q96P15 392 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 VAT1Q99536 393 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 TTLL2Q9BWV7 592 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 CAPS2Q9BXY5 557 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 MAGEB5Q9BZ81 275 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 PPP1R12CQ9BZL4 782 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 TKTL2Q9H0I9 626 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 C11orf49Q9H6J7 331 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 C10orf88Q9H8K7 445 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 CNOT10Q9H9A5 744 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 NMUR1Q9HB89 426 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 RC3H2Q9HBD1 1191 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 SAYSD1Q9NPB0 183 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ANLNQ9NQW6 1124 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 EIF2B3Q9NR50 452 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 TMEM39AQ9NV64 488 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ETNK2Q9NVF9 386 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ABI2Q9NYB9 513 aaPredicted RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 IGSF9Q9P2J2 1179 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SLC24A2Q9UI40 661 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 XPO7Q9UIA9 1087 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 MAFFQ9ULX9 164 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 NOVA2Q9UNW9 492 aaKnown RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 TLR6Q9Y2C9 796 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ACTL7BQ9Y614 415 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 CHD5Q8TDI0 1954 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ANAPC1Q9H1A4 1944 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 DENND4CQ5VZ89 1909 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 A0A1W2PQH9 124 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 FAM72CH0Y354 149 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 FGF10O15520 208 aaPredicted RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 CREB3O43889 395 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 MFSD11O43934 449 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 OPHN1O60890 802 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 CDH16O75309 829 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 STK10O94804 968 aaKnown RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 BAIAP3O94812 1187 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 VNN2O95498 520 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 ACSL3O95573 720 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 TIMP1P01033 207 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 AMHP03971 560 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 MLNP12872 115 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 YWHAQP27348 245 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 PHBP35232 272 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 MDH1P40925 334 aaKnown RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 MAGEA3P43357 314 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 MMP13P45452 471 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 TUFMP49411 452 aaKnown RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 ALDH7A1P49419 539 aaKnown RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 CDR1P51861 262 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 PPIDQ08752 370 aaKnown RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 GALNT2Q10471 571 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 PDIA2Q13087 525 aaKnown RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 NR1H3Q13133 447 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 PARP6Q2NL67 630 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 CCDC38Q502W7 563 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 ARTNQ5T4W7 220 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 FAM72AQ5TYM5 149 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 SNX30Q5VWJ9 437 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 KCTD16Q68DU8 428 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 FAM72DQ6L9T8 149 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 DENND5BQ6ZUT9 1274 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 FAM72BQ86X60 149 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 LRRC49Q8IUZ0 686 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 KLHDC8BQ8IXV7 354 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 VPS52Q8N1B4 723 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 SH2D3CQ8N5H7 860 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 ATP11CQ8NB49 1132 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 BCL7CQ8WUZ0 217 aaPredicted RBP8.63□□□□□ -1.03
RNF4-220ENST00000513578 DPF3Q92784 378 aa8.63□□□□□ -1.03
RNF4-220ENST00000513578 CASP10Q92851 521 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms