RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SLC13A2Q13183 592 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF846Q147U1 533 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 VPS72Q15906 364 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PPM1NQ8N819 430 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 MAP6Q96JE9 813 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 C8orf48Q96LL4 319 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF347Q96SE7 839 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF717Q9BY31 904 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 MAGEE1Q9HCI5 957 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 MCM9Q9NXL9 1143 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PCDHA12Q9UN75 941 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ASTN2O75129 1339 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 RGS13O14921 159 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 GH2P01242 217 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 KRT8P05787 483 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 EEF1B2P24534 225 aaKnown RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 STX1BP61266 288 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 MYL7Q01449 175 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 EN1Q05925 392 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 BMPR2Q13873 1038 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 LRIT3Q3SXY7 679 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 IQSEC1Q6DN90 963 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 C16orf46Q6P387 395 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ZBTB49Q6ZSB9 765 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 USP37Q86T82 979 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM102Q8N9M5 508 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ABHD11Q8NFV4 315 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 SH3YL1Q96HL8 342 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 VCPIP1Q96JH7 1222 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 AS3MTQ9HBK9 375 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PNPOQ9NVS9 261 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PDXKO00764 312 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 CYP1A2P05177 515 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MATN1P21941 496 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 RFC4P35249 363 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 PSMC2P35998 433 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MLLT3P42568 568 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 NAMPTP43490 491 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 STILQ15468 1287 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 ZC3H3Q8IXZ2 948 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 PIWIL2Q8TC59 973 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MARK4Q96L34 752 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 PPP1R36Q96LQ0 422 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 DHRS9Q9BPW9 319 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 HMG20AQ9NP66 347 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 DNMT3BQ9UBC3 853 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 RIC1Q4ADV7 1423 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 AKAP11Q9UKA4 1901 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MEN1O00255 615 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 HTRA2O43464 458 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MAN1A2O60476 641 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MORF4L2Q15014 288 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 DLG2Q15700 870 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 FSCBQ5H9T9 825 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 CYP4A22Q5TCH4 519 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 ANKRD22Q5VYY1 191 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 CIAPIN1Q6FI81 312 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 BNC2Q6ZN30 1099 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 ASCC1Q8N9N2 400 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 LSM14AQ8ND56 463 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 TOR1AIP2Q8NFQ8 470 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 AGR3Q8TD06 166 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF597Q96LX8 424 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 LENG8Q96PV6 779 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 NOL11Q9H8H0 719 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 PPME1Q9Y570 386 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 A0A0B4J269 797 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 GTPBP10A4D1E9 387 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 NADKO95544 446 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 CALCAP01258 141 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 GALNT2Q10471 571 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 TUBB3Q13509 450 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 COG2Q14746 738 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 PXDC1Q5TGL8 231 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 POTEGQ6S5H5 508 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC47A2Q86VL8 602 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 ARHGEF19Q8IW93 802 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 ZCCHC7Q8N3Z6 543 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC4A5Q9BY07 1137 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 MAD2L2Q9UI95 211 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 PLLPQ9Y342 182 aa12.36□□□□□ -0.43
LIMCH1-213ENST00000511496 M0QX08 132 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 IL1BP01584 269 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 WEE2P0C1S8 567 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 TGM1P22735 817 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ACAT1P24752 427 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 PTGS2P35354 604 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 PUM3Q15397 648 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 EPC2Q52LR7 807 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ZCCHC8Q6NZY4 707 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 LYPD8Q6UX82 237 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 ATL1Q8WXF7 558 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 HDAC2Q92769 488 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 RAD21L1Q9H4I0 556 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 RUBCNLQ9H714 662 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 SCUBE2Q9NQ36 999 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 STMN3Q9NZ72 180 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 COQ3Q9NZJ6 369 aa12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 WARS2Q9UGM6 360 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-213ENST00000511496 PRSS51A0A1B0GVH4 220 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms