RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 CNPP09543 421 aaKnown RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 CSF1P09603 554 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 NHLRC4P0CG21 123 aaPredicted RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 IGFBP2P18065 325 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 MATN1P21941 496 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 SFPQP23246 707 aaKnown RBP eCLIP3.9□□□□□ -1.79
LSM6-205ENST00000507449 DUSP1P28562 367 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 CXCR5P32302 372 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 AGTR2P50052 363 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 CACNA2D1P54289 1103 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 WDR5P61964 334 aaKnown RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 TLE3Q04726 772 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 RNASELQ05823 741 aaKnown RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 TBRG1Q3YBR2 411 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 ZNF569Q5MCW4 686 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 ANKRD45Q5TZF3 282 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 DENND2CQ68D51 928 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 OLFML1Q6UWY5 402 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 SYNE3Q6ZMZ3 975 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 BBS12Q6ZW61 710 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 SLC29A4Q7RTT9 530 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 GRASPQ7Z6J2 395 aaPredicted RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 AMIGO2Q86SJ2 522 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 TMEM57Q8N5G2 664 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 NGDNQ8NEJ9 315 aaKnown RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 LINS1Q8NG48 757 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 MAELQ96JY0 434 aaKnown RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 UROC1Q96N76 676 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 SCAND2PQ9GZW5 306 aaPredicted RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 MAF1Q9H063 256 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 KLK15Q9H2R5 256 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 ASB6Q9NWX5 421 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 IFT80Q9P2H3 777 aaPredicted RBP3.9□□□□□ -1.79
LSM6-205ENST00000507449 B3GNT3Q9Y2A9 372 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 DERAQ9Y315 318 aa3.9□□□□□ -1.79
LSM6-205ENST00000507449 CYP3A7-CYP3A51PA0A087WV96 503 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 CLIC1O00299 241 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 SH3BP5O60239 455 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 C1QL1O75973 258 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 CYP2D6P10635 497 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 ACP5P13686 325 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 WT1P19544 449 aaPredicted RBP3.89□□□□□ -1.79
LSM6-205ENST00000507449 CYP3A7P24462 503 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 NDUFS1P28331 727 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 GRK5P34947 590 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 STAT6P42226 847 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 PTH2RP49190 550 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 CLK3P49761 638 aaKnown RBP3.89□□□□□ -1.79
LSM6-205ENST00000507449 TUBP50607 506 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 RBM5P52756 815 aaKnown RBP eCLIP3.89□□□□□ -1.79
LSM6-205ENST00000507449 RCAN1P53805 252 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 HOXA4Q00056 320 aaPredicted RBP3.89□□□□□ -1.79
LSM6-205ENST00000507449 CBFBQ13951 182 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 MFSD13AQ14CX5 517 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 LARS2Q15031 903 aaKnown RBP3.89□□□□□ -1.79
LSM6-205ENST00000507449 MAP3K21Q5TCX8 1036 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 CCDC70Q6NSX1 233 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 TRIM72Q6ZMU5 477 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 ZNF804AQ7Z570 1209 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 LAS2Q8IYD9 372 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 EXD3Q8N9H8 876 aa3.89□□□□□ -1.79
LSM6-205ENST00000507449 AKAP1Q92667 903 aaKnown RBP eCLIP3.89□□□□□ -1.79
LSM6-205ENST00000507449 GATA5Q9BWX5 397 aaPredicted RBP3.89□□□□□ -1.79
LSM6-205ENST00000507449 COPG1Q9Y678 874 aaKnown RBP3.89□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3DA0A087WVF3 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3IA0A087WXS9 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3EA0A087X179 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3KA0A087X1G2 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.88□□□□□ -1.79
LSM6-205ENST00000507449 VWA3AA6NCI4 1184 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3BA6NDS4 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3FA6NER0 549 aaPredicted RBP3.88□□□□□ -1.79
LSM6-205ENST00000507449 TARM1B6A8C7 271 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3LB9A6J9 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 H7C1Q1 480 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 GRM8O00222 908 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 HOXC11O43248 304 aaPredicted RBP3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3HP0C7X1 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 LYL1P12980 280 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 CHN1P15882 459 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 MCM2P49736 904 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 UBE3AQ05086 875 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 CHRNDQ07001 517 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 SLC14A1Q13336 389 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 SLC12A1Q13621 1099 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 KCNB1Q14721 858 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 JAKMIP3Q5VZ66 844 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3GQ6DHY5 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3CQ6IPX1 549 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 WDR93Q6P2C0 686 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 CEP85Q6P2H3 762 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 DCDC5Q6ZRR9 648 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 MRGPRGQ86SM5 289 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 HEATR4Q86WZ0 1026 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 ADGRF3Q8IZF5 1079 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 TBC1D3Q8IZP1 549 aaPredicted RBP3.88□□□□□ -1.79
LSM6-205ENST00000507449 ESX1Q8N693 406 aa3.88□□□□□ -1.79
LSM6-205ENST00000507449 PTGR2Q8N8N7 351 aaPredicted RBP3.88□□□□□ -1.79
LSM6-205ENST00000507449 FAM98AQ8NCA5 519 aaKnown RBP3.88□□□□□ -1.79
LSM6-205ENST00000507449 PNISRQ8TF01 805 aaKnown RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms