RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZNF557Q8N988 423 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-214ENST00000496043 SORCS1Q8WY21 1168 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 PRCCQ92733 491 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-214ENST00000496043 FOXJ1Q92949 421 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 SIPA1Q96FS4 1042 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 ZNF419Q96HQ0 510 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-214ENST00000496043 THAP9Q9H5L6 903 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 ABCB8Q9NUT2 735 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 APEX2Q9UBZ4 518 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 DACH1Q9UI36 760 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 GGA2Q9UJY4 613 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 SLC6A14Q9UN76 642 aa13.25□□□□□ -0.29
PTPRF-214ENST00000496043 CFIP05156 583 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 PABPC1P11940 636 aaKnown RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 POLR2EP19388 210 aaKnown RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 ERCC5P28715 1186 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 SNX16P57768 344 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 PTK2Q05397 1052 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 GFPT1Q06210 699 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 NNTQ13423 1086 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 MAN2A1Q16706 1144 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 UAP1L1Q3KQV9 507 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 FNDC3BQ53EP0 1204 aaKnown RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 FAM133BQ5BKY9 247 aaKnown RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 N4BP2L1Q5TBK1 243 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 SYPL2Q5VXT5 272 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 PEAR1Q5VY43 1037 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 CCDC117Q8IWD4 279 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 RGL4Q8IZJ4 473 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 AHI1Q8N157 1196 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 DQX1Q8TE96 717 aaKnown RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 SLC39A13Q96H72 371 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 FCRL2Q96LA5 508 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 MKRN2Q9H000 416 aaKnown RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 POPDC2Q9HBU9 364 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 ACP6Q9NPH0 428 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 WSB2Q9NYS7 404 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-214ENST00000496043 STIM2Q9P246 746 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 SUN2Q9UH99 717 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 SLC12A6Q9UHW9 1150 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 CYTH4Q9UIA0 394 aa13.24□□□□□ -0.29
PTPRF-214ENST00000496043 TYW5A2RUC4 315 aaKnown RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 BECN2A8MW95 431 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 E5RJQ4 531 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 PAPSS1O43252 624 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 SERPINF2P08697 491 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 PRKCSHP14314 528 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 ENGP17813 658 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 PRKCHP24723 683 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 SLC6A4P31645 630 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 KRT9P35527 623 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 SGSHP51688 502 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 ATXN3P54252 364 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 APBA1Q02410 837 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 CT47A1Q5JQC4 288 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 WDR45BQ5MNZ6 344 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 MBLAC2Q68D91 279 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 ADIPOR2Q86V24 386 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 SLC41A1Q8IVJ1 513 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 WDTC1Q8N5D0 677 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 HJURPQ8NCD3 748 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 FIBINQ8TAL6 211 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 ADAM32Q8TC27 787 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 CYB5D2Q8WUJ1 264 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 SHC3Q92529 594 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 TOE1Q96GM8 510 aaKnown RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 HSPA12BQ96MM6 686 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 NUP58Q9BVL2 599 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 LHX5Q9H2C1 402 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 NDST4Q9H3R1 872 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 USP36Q9P275 1121 aaKnown RBP13.23□□□□□ -0.29
PTPRF-214ENST00000496043 DNAJC12Q9UKB3 198 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 PCDHGC3Q9UN70 934 aa13.23□□□□□ -0.29
PTPRF-214ENST00000496043 DNAH14Q0VDD8 3507 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 ATXN2Q99700 1313 aaKnown RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 FOXN3O00409 490 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 TRUB2O95900 331 aaKnown RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 APOEP02649 317 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 GLI1P08151 1106 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 SYPP08247 313 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 DLDP09622 509 aaKnown RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 HLA-EP13747 358 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 GNSP15586 552 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 CSRP1P21291 193 aaKnown RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 TPMTP51580 245 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 COPAP53621 1224 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 BPIFB4P59827 614 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 CDK17Q00537 523 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 PDCLQ13371 301 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 CAMK2GQ13555 558 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 VWA3BQ502W6 1294 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 ZC3H12AQ5D1E8 599 aaKnown RBP13.22□□□□□ -0.29
PTPRF-214ENST00000496043 MS4A13Q5J8X5 152 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 EFHC1Q5JVL4 640 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 NADSYN1Q6IA69 706 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 MFN1Q8IWA4 741 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 ATP6V0D2Q8N8Y2 350 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 CADM4Q8NFZ8 388 aa13.22□□□□□ -0.29
PTPRF-214ENST00000496043 OR2T3Q8NH03 318 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms