RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 KCNU1A8MYU2 1149 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 F9P00740 461 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 TDGF1P13385 188 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 HOXD9P28356 352 aaPredicted RBP16.52■□□□□ 0.24
LIME1-209ENST00000494776 PBX1P40424 430 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 KIR2DL1P43626 348 aaPredicted RBP16.52■□□□□ 0.24
LIME1-209ENST00000494776 FNTBP49356 437 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 SGSHP51688 502 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 DEUP1Q05D60 604 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 MTA1Q13330 715 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 SLC25A52Q3SY17 297 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 MS4A13Q5J8X5 152 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 RAP1GAP2Q684P5 730 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 ANKS1BQ7Z6G8 1248 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 PHF13Q86YI8 300 aaPredicted RBP16.52■□□□□ 0.24
LIME1-209ENST00000494776 LGI2Q8N0V4 545 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 CAMKK1Q8N5S9 505 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 IL17RCQ8NAC3 791 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 UCMAQ8WVF2 138 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 NKD2Q969F2 451 aaPredicted RBP16.52■□□□□ 0.24
LIME1-209ENST00000494776 P2RY11Q96G91 374 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 NPY6RQ99463 290 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 SELENOOQ9BVL4 669 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 SEMA4AQ9H3S1 761 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 WDCPQ9H6R7 721 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 TMEM51Q9NW97 253 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 XPO7Q9UIA9 1087 aaKnown RBP16.52■□□□□ 0.24
LIME1-209ENST00000494776 CLEC4EQ9ULY5 219 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 PAXBP1Q9Y5B6 917 aa16.52■□□□□ 0.24
LIME1-209ENST00000494776 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.52■□□□□ 0.24
LIME1-209ENST00000494776 TMCO5BA8MYB1 307 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 PRRT4C9JH25 899 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 F5H5T6 163 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 APBB3O95704 486 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 SKILP12757 684 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 TACR2P21452 398 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 FLT3P36888 993 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 PXNP49023 591 aaPredicted RBP16.51■□□□□ 0.23
LIME1-209ENST00000494776 DMWDQ09019 674 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 EIF4EBP2Q13542 120 aaPredicted RBP16.51■□□□□ 0.23
LIME1-209ENST00000494776 TDRD12Q587J7 1177 aaKnown RBP16.51■□□□□ 0.23
LIME1-209ENST00000494776 MPP7Q5T2T1 576 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 ACAD10Q6JQN1 1059 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 PPP1R2P3Q6NXS1 205 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 LONP2Q86WA8 852 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 MFN1Q8IWA4 741 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 CHPFQ8IZ52 775 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 CFAP52Q8N1V2 620 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 CARNMT1Q8N4J0 409 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 EMC1Q8N766 993 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 ZNF557Q8N988 423 aaPredicted RBP16.51■□□□□ 0.23
LIME1-209ENST00000494776 ZBTB44Q8NCP5 570 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 TSTD1Q8NFU3 115 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 CFAP57Q96MR6 1250 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 TBCBQ99426 244 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 TMEM59LQ9UK28 342 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 LUC7L2Q9Y383 392 aaKnown RBP16.51■□□□□ 0.23
LIME1-209ENST00000494776 STARD13Q9Y3M8 1113 aa16.51■□□□□ 0.23
LIME1-209ENST00000494776 KIAA1549LQ6ZVL6 1849 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 ANKRD62A6NC57 917 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 PROB1E7EW31 1015 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 SGK1O00141 431 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 GFRA2O00451 464 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 GFRA3O60609 400 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 ALDH1A2O94788 518 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 KRT3P12035 628 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 PDGFRAP16234 1089 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 TFE3P19532 575 aaPredicted RBP16.5■□□□□ 0.23
LIME1-209ENST00000494776 NTSR1P30989 418 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 HOXA6P31267 233 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 SDC4P31431 198 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 PRKCIP41743 596 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 WASP42768 502 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 DGKEP52429 567 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 RPS24P62847 133 aaKnown RBP16.5■□□□□ 0.23
LIME1-209ENST00000494776 ZBED6P86452 979 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 ATP11AP98196 1134 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 C1QBPQ07021 282 aaKnown RBP16.5■□□□□ 0.23
LIME1-209ENST00000494776 CDH18Q13634 790 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 E2F5Q15329 346 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 CRY1Q16526 586 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 GEN1Q17RS7 908 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 EGFLAMQ63HQ2 1017 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 DNAJC24Q6P3W2 148 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 MON1BQ7L1V2 547 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 ARCQ7LC44 396 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 NELL1Q92832 810 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 PRICKLE1Q96MT3 831 aaPredicted RBP16.5■□□□□ 0.23
LIME1-209ENST00000494776 CIPCQ9C0C6 399 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 TKTL2Q9H0I9 626 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 SIK2Q9H0K1 926 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 POLMQ9NP87 494 aaPredicted RBP16.5■□□□□ 0.23
LIME1-209ENST00000494776 PIGVQ9NUD9 493 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 ABCB8Q9NUT2 735 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 CAPN11Q9UMQ6 739 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 ATG2BQ96BY7 2078 aa16.5■□□□□ 0.23
LIME1-209ENST00000494776 H0Y626 953 aa16.49■□□□□ 0.23
LIME1-209ENST00000494776 ZBTB24O43167 697 aaPredicted RBP16.49■□□□□ 0.23
LIME1-209ENST00000494776 TIMM44O43615 452 aa16.49■□□□□ 0.23
LIME1-209ENST00000494776 GJB6O95452 261 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms