RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 BTN2A3PQ96KV6 586 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 PCDH18Q9HCL0 1135 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 SLC12A6Q9UHW9 1150 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 LSM7Q9UK45 103 aaKnown RBP20.07■□□□□ 0.8
USP39-218ENST00000493829 AGO1Q9UL18 857 aaKnown RBP20.07■□□□□ 0.8
USP39-218ENST00000493829 TRDMT1O14717 391 aaKnown RBP20.06■□□□□ 0.8
USP39-218ENST00000493829 L1CAMP32004 1257 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 AIF1P55008 147 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 VCPP55072 806 aaKnown RBP20.06■□□□□ 0.8
USP39-218ENST00000493829 MS4A13Q5J8X5 152 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 NADSYN1Q6IA69 706 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 MFSD7Q6UXD7 560 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 CHSY1Q86X52 802 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 HLA-CQ95604 372 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 CAPZA3Q96KX2 299 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 SMARCAL1Q9NZC9 954 aa20.06■□□□□ 0.8
USP39-218ENST00000493829 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.05■□□□□ 0.8
USP39-218ENST00000493829 CEP104O60308 925 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 URI1O94763 535 aaPredicted RBP20.05■□□□□ 0.8
USP39-218ENST00000493829 ZRANB2O95218 330 aaKnown RBP eCLIP20.05■□□□□ 0.8
USP39-218ENST00000493829 KDELR1P24390 212 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 SLC11A2P49281 568 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 DPYSL3Q14195 570 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 DPYSL2Q16555 572 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 SEL1L2Q5TEA6 688 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 PAPD7Q5XG87 772 aaKnown RBP20.05■□□□□ 0.8
USP39-218ENST00000493829 KAZNQ674X7 775 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 RFWD3Q6PCD5 774 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 EXD1Q8NHP7 514 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 KIF18AQ8NI77 898 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 RSPRY1Q96DX4 576 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 RBM41Q96IZ5 413 aaKnown RBP20.05■□□□□ 0.8
USP39-218ENST00000493829 ASB16Q96NS5 453 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 GDE1Q9NZC3 331 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 OR12D3Q9UGF7 316 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 ZMYM5Q9UJ78 669 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 VANGL2Q9ULK5 521 aa20.05■□□□□ 0.8
USP39-218ENST00000493829 C3orf70A6NLC5 250 aaPredicted RBP20.04■□□□□ 0.8
USP39-218ENST00000493829 ACSL4O60488 711 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 GREM1O60565 184 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 KRT10P13645 584 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 GOT1P17174 413 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 ARSEP51690 589 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 USP4Q13107 963 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 SMAD4Q13485 552 aaKnown RBP20.04■□□□□ 0.8
USP39-218ENST00000493829 SPOCD1Q6ZMY3 1216 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 C14orf80Q86SX3 495 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 DDX42Q86XP3 938 aaKnown RBP eCLIP20.04■□□□□ 0.8
USP39-218ENST00000493829 BBS7Q8IWZ6 715 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 SUSD6Q92537 303 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 SMARCD2Q92925 531 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 MS4A14Q96JA4 679 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 NECTIN4Q96NY8 510 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 HAPLN3Q96S86 360 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 HEMGNQ9BXL5 484 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 SAR1BQ9Y6B6 198 aa20.04■□□□□ 0.8
USP39-218ENST00000493829 SOBPA7XYQ1 873 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 EEF2KO00418 725 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 MBTPS2O43462 519 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 TUBB4AP04350 444 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 SLC6A4P31645 630 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 AMPD2Q01433 879 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 ZNF77Q15935 545 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 FAM133BQ5BKY9 247 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 RWDD4Q6NW29 188 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 RCOR2Q8IZ40 523 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 MAFAQ8NHW3 353 aaPredicted RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 MYEOVQ96EZ4 313 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 CARD9Q9H257 536 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 CWC15Q9P013 229 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 TSPAN3O60637 253 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 LRIG2O94898 1065 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 TACR2P21452 398 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 ARL4AP40617 200 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 IRAK1P51617 712 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 TPI1P60174 286 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 DYNLT1P63172 113 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 AUHQ13825 339 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 Q6ZNB5 142 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 ADAT2Q7Z6V5 191 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 CIR1Q86X95 450 aaPredicted RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 PSTKQ8IV42 348 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 LGI2Q8N0V4 545 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 CELF5Q8N6W0 485 aaKnown RBP20.03■□□□□ 0.8
USP39-218ENST00000493829 LRRC3BQ96PB8 259 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 EPAS1Q99814 870 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 KXD1Q9BQD3 176 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 HERPUD2Q9BSE4 406 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 DCLK3Q9C098 648 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 PRDM6Q9NQX0 595 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 WNT6Q9Y6F9 365 aa20.03■□□□□ 0.8
USP39-218ENST00000493829 PRUNE2Q8WUY3 3088 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 E9PAM4 449 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 F5H5T6 163 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 H3BRJ5 948 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 TCP1P17987 556 aaKnown RBP20.02■□□□□ 0.8
USP39-218ENST00000493829 FCARP24071 287 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 CDKN2BP42772 138 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 TFF2Q03403 129 aa20.02■□□□□ 0.8
USP39-218ENST00000493829 PDK2Q15119 407 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms