RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 SCML2Q9UQR0 700 aa7.09□□□□□ -1.27
VPS52-219ENST00000493379 MRPS23Q9Y3D9 190 aaKnown RBP7.09□□□□□ -1.27
VPS52-219ENST00000493379 RELNP78509 3460 aa7.09□□□□□ -1.27
VPS52-219ENST00000493379 NOTCH2Q04721 2471 aa7.09□□□□□ -1.27
VPS52-219ENST00000493379 DOCK6Q96HP0 2047 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 MIA3Q5JRA6 1907 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 XPO1O14980 1071 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 EPHB6O15197 1021 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 TEX33O43247 280 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 OAS1P00973 400 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 TPM2P07951 284 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 SETSIPP0DME0 302 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 CCDC130P13994 396 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 CD33P20138 364 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 YWHAQP27348 245 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 GABRR2P28476 465 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 SLC5A3P53794 718 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 BCAT1P54687 386 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 RACK1P63244 317 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 SLC7A9P82251 487 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 APBA1Q02410 837 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 CSTF1Q05048 431 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 FCHO2Q0JRZ9 810 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 BST2Q10589 180 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 LRMPQ12912 555 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 DRAP1Q14919 205 aaPredicted RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 HSP90AA4PQ58FG1 418 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 FKBP15Q5T1M5 1219 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 GJB7Q6PEY0 223 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 TSSK4Q6SA08 328 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 BHLHA9Q7RTU4 235 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 CCDC186Q7Z3E2 898 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 ZNF605Q86T29 641 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 CREBRFQ8IUR6 639 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 WDTC1Q8N5D0 677 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 TDRD5Q8NAT2 981 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 RBBP8NLQ8NC74 664 aaPredicted RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 PDZD8Q8NEN9 1154 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 SCAMP5Q8TAC9 235 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 HNRNPLLQ8WVV9 542 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 SMARCD2Q92925 531 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 ELSPBP1Q96BH3 223 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 LRIG1Q96JA1 1093 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 TTYH3Q9C0H2 523 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 SRA1Q9HD15 236 aaKnown RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 SLC2A4RGQ9NR83 387 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 RXFP3Q9NSD7 469 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 FAM49BQ9NUQ9 324 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 CLIC5Q9NZA1 410 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 GGT7Q9UJ14 662 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 TSPAN16Q9UKR8 245 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 ATXN7L1Q9ULK2 861 aaPredicted RBP7.08□□□□□ -1.28
VPS52-219ENST00000493379 PCDHB4Q9Y5E5 795 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 PCDHGB7Q9Y5F8 929 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 FHOD1Q9Y613 1164 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 DENND4AQ7Z401 1863 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 DOCK8Q8NF50 2099 aa7.08□□□□□ -1.28
VPS52-219ENST00000493379 PTPRDP23468 1912 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 FBN2P35556 2912 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 F8VZ95 297 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 ARNTLO00327 626 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 MED7O43513 233 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 LILRB5O75023 590 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 CEBPBP17676 345 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 ANXA13P27216 316 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 PDE6CP51160 858 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 MAP3K7CLP57077 242 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 PLAURQ03405 335 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 UBXN1Q04323 297 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 TAF10Q12962 218 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 EIF4EBP2Q13542 120 aaPredicted RBP7.07□□□□□ -1.28
VPS52-219ENST00000493379 TDGQ13569 410 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 SYCP1Q15431 976 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 TEAD2Q15562 447 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 FAM78AQ5JUQ0 283 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 SDHAF4Q5VUM1 108 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 PMF1Q6P1K2 205 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 SARM1Q6SZW1 724 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 PARM1Q6UWI2 310 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 MTSS1LQ765P7 747 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 IRF2BP2Q7Z5L9 587 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 RAB44Q7Z6P3 723 aaPredicted RBP7.07□□□□□ -1.28
VPS52-219ENST00000493379 PIGZQ86VD9 579 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 ZNF677Q86XU0 584 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 ARID3BQ8IVW6 561 aaPredicted RBP7.07□□□□□ -1.28
VPS52-219ENST00000493379 MFSD6LQ8IWD5 586 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 SCN4BQ8IWT1 228 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 CMTM8Q8IZV2 173 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 ZBTB44Q8NCP5 570 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 FGF14Q92915 247 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 BHMTQ93088 406 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 GTPBP3Q969Y2 492 aaKnown RBP7.07□□□□□ -1.28
VPS52-219ENST00000493379 IQCDQ96DY2 449 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 MCRS1Q96EZ8 462 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 LRRC3BQ96PB8 259 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 SLITRK1Q96PX8 696 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 SYT11Q9BT88 431 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 RPP25Q9BUL9 199 aaKnown RBP7.07□□□□□ -1.28
VPS52-219ENST00000493379 FOXQ1Q9C009 403 aa7.07□□□□□ -1.28
VPS52-219ENST00000493379 ATXN3LQ9H3M9 355 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms