RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SF3B5Q9BWJ5 86 aaKnown RBP4.37□□□□□ -1.71
BRCA1-220ENST00000492859 APOL6Q9BWW8 343 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 KRTAP4-8Q9BYQ9 185 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 CCSER1Q9C0I3 900 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 SLC26A1Q9H2B4 701 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 RNPEPQ9H4A4 650 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 IGFLR1Q9H665 355 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 BRF2Q9HAW0 419 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 MKNK2Q9HBH9 465 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 FBRSL1Q9HCM7 1045 aaKnown RBP4.37□□□□□ -1.71
BRCA1-220ENST00000492859 CCM2LQ9NUG4 571 aaPredicted RBP4.37□□□□□ -1.71
BRCA1-220ENST00000492859 DZANK1Q9NVP4 752 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 RAB20Q9NX57 234 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 TAB2Q9NYJ8 693 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 UXTQ9UBK9 157 aaPredicted RBP4.37□□□□□ -1.71
BRCA1-220ENST00000492859 SLC7A8Q9UHI5 535 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 SERTAD1Q9UHV2 236 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 FHOD1Q9Y613 1164 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 PTPRGP23470 1445 aa4.37□□□□□ -1.71
BRCA1-220ENST00000492859 SYCE3A1L190 88 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 FAM47DPA6NHR8 397 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 A8MV72 311 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GCOM1H8Y6P7 765 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SOCS6O14544 535 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PRDM1O75626 825 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 IPO13O94829 963 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 METTL18O95568 372 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CKMP06732 381 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 LIPFP07098 398 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SUPT20HL2P0C7V6 817 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MYZAPP0CAP1 466 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 KRT3P12035 628 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ATP2A2P16615 1042 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SYN1P17600 705 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 NR2F2P24468 414 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ITGB8P26012 769 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ARL3P36405 182 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 BMPR1AP36894 532 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MDH1P40925 334 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CASP3P42574 277 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 THOP1P52888 689 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PPARAQ07869 468 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PAK1Q13153 545 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PPIL2Q13356 520 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 THOC5Q13769 683 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CAPSQ13938 189 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 NFIXQ14938 502 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SEC23BQ15437 767 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CHRNA6Q15825 494 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SMTNL2Q2TAL5 461 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PGS1Q32NB8 556 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CCDC153Q494R4 210 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GLE1Q53GS7 698 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 NHSL2Q5HYW2 709 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CFAP157Q5JU67 520 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RASIP1Q5U651 963 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CDCP2Q5VXM1 449 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ARHGAP17Q68EM7 881 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MFSD5Q6N075 450 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MRPL14Q6P1L8 145 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CYB5D1Q6P9G0 228 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 FOXR2Q6PJQ5 311 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 H1FNTQ75WM6 255 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RRAGAQ7L523 313 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 VASH1Q7L8A9 365 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ASPGQ86U10 573 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SLC9A9Q8IVB4 645 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF679Q8IYX0 411 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ALDH16A1Q8IZ83 802 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 SYCP3Q8IZU3 236 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ADSSL1Q8N142 457 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 AGGF1Q8N302 714 aaeCLIP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RASGEF1CQ8N431 466 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TRPV1Q8NER1 839 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF461Q8TAF7 563 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 LMBR1Q8WVP7 490 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ASZ1Q8WWH4 475 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RIN2Q8WYP3 895 aaPredicted RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 LZICQ8WZA0 190 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 THRSPQ92748 146 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TNFRSF25Q93038 417 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GFM2Q969S9 779 aaKnown RBP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 COA7Q96BR5 231 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PHF21BQ96EK2 531 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ACSBG1Q96GR2 724 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 FAM84AQ96KN4 292 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 RPGRIP1Q96KN7 1286 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 OR1F2PQ96R84 312 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 PANX2Q96RD6 677 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 TUBGCP5Q96RT8 1024 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 CGRRF1Q99675 332 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 GORASP1Q9BQQ3 440 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 COLEC11Q9BWP8 271 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 BBS2Q9BXC9 721 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 FTOQ9C0B1 505 aaKnown RBP eCLIP4.36□□□□□ -1.71
BRCA1-220ENST00000492859 ATP13A3Q9H7F0 1226 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 MLXIPQ9HAP2 919 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 KIF9Q9HAQ2 790 aa4.36□□□□□ -1.71
BRCA1-220ENST00000492859 IL1RAPL2Q9NP60 686 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms