RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 NR1H2P55055 460 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 RBP5P82980 135 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 PDK2Q15119 407 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 PRKD1Q15139 912 aaPredicted RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 GIPC3Q8TF64 312 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 LENG8Q96PV6 779 aaPredicted RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 OMDQ99983 421 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 GID8Q9NWU2 228 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TJP2Q9UDY2 1190 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 IPO11Q9UI26 975 aaKnown RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TMCO1Q9UM00 188 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 MYH1P12882 1939 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 MYH4Q9Y623 1939 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 ZNF536O15090 1300 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 CXorf49A8MYA2 514 aaPredicted RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 ADRM1Q16186 407 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 FAM83EQ2M2I3 478 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TBCELQ5QJ74 424 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 C6orf10Q5SRN2 563 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 ARMCX2Q7L311 632 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 WDR49Q8IV35 697 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 UNC5BQ8IZJ1 945 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 FAM210AQ96ND0 272 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 COG4Q9H9E3 785 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 NMRAL1Q9HBL8 299 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 CHADO15335 359 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 CCNE2O96020 404 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 OCM2P0CE71 109 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 OCMP0CE72 109 aaPredicted RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 EIF2B2P49770 351 aaKnown RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 NDST1P52848 882 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 NUP107P57740 925 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TRAF2Q12933 501 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 ANGEL2Q5VTE6 544 aaKnown RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 KRT27Q7Z3Y8 459 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TMC7Q7Z402 723 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 C12orf56Q8IXR9 622 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TMCO5AQ8N6Q1 288 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 KLHL23Q8NBE8 558 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 PCYOX1LQ8NBM8 494 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 DCAKDQ8WVC6 231 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 TRAPPC12Q8WVT3 735 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 CPXM1Q96SM3 734 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 SEPHS2Q99611 448 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 EBNA1BP2Q99848 306 aaKnown RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 KLHL25Q9H0H3 589 aa13.16□□□□□ -0.3
SHOX2-205ENST00000490689 SARS2Q9NP81 518 aaKnown RBP13.16□□□□□ -0.3
SHOX2-205ENST00000490689 IGKV6D-41A0A0C4DH26 115 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 UBA6A0AVT1 1052 aaPredicted RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 ZNF839A8K0R7 811 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 NR5A2O00482 541 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 YWHAZP63104 245 aaKnown RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 KLF10Q13118 480 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 NRG4Q8WWG1 115 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SEPT1Q8WYJ6 367 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 FAM167AQ96KS9 214 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 RNF157Q96PX1 679 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 LGMNQ99538 433 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 NPAS2Q99743 824 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 TEX13BQ9BXU2 312 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 LIN28AQ9H9Z2 209 aaKnown RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 AP4S1Q9Y587 144 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 RNF103O00237 685 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 MAGEB2O15479 319 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 EDIL3O43854 480 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 HUS1O60921 280 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 TRMUO75648 421 aaKnown RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SUPT20HL2P0C7V6 817 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 PAMP19021 973 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 TCF7P36402 384 aaPredicted RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 C21orf59P57076 290 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SUPT20HL1Q3ZLR7 823 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SLC7A14Q8TBB6 771 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 HTR3CQ8WXA8 447 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 C7orf26Q96N11 449 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 LRRC40Q9H9A6 602 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 ARHGEF38Q9NXL2 777 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SPATA31A5Q5VU36 1347 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SPATA31A7Q8IWB4 1347 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 HEATR9A2RTY3 570 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 CLOCKO15516 846 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 TRUB2O95900 331 aaKnown RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 DLDP09622 509 aaKnown RBP13.15□□□□□ -0.3
SHOX2-205ENST00000490689 CSH1P0DML2 217 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 CSH2P0DML3 217 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 CNTFP26441 200 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 CSHL1Q14406 222 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 IGDCC3Q8IVU1 814 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 DENND1AQ8TEH3 1009 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 LPAR1Q92633 364 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 GPRASP2Q96D09 838 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 APBA2Q99767 749 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 CIB1Q99828 191 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 GPAMQ9HCL2 828 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 ZNF358Q9NW07 568 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 ZNRF3Q9ULT6 936 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 PSMD13Q9UNM6 376 aa13.15□□□□□ -0.3
SHOX2-205ENST00000490689 SORCS3Q9UPU3 1222 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms