RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 WT1P19544 449 aaPredicted RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 RXRAP19793 462 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 CHRM3P20309 590 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 GPD1P21695 349 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ITPKBP27987 946 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 CST5P28325 142 aaPredicted RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 HADHAP40939 763 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 DPP6P42658 865 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 CCR9P51686 369 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 PPP5CP53041 499 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 GNAI1P63096 354 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TAP2Q03519 686 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 EXOSC9Q06265 439 aaKnown RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 CHRNDQ07001 517 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 NEXNQ0ZGT2 675 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TUBB3Q13509 450 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 SLC12A1Q13621 1099 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 KIF22Q14807 665 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 KHDC1LQ5JSQ8 128 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ZNF425Q6IV72 752 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 H1FNTQ75WM6 255 aaPredicted RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 RRAGAQ7L523 313 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 R3HCC1LQ7Z5L2 792 aaKnown RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 PDSS2Q86YH6 399 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 CEP97Q8IW35 865 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ZBTB8BQ8NAP8 495 aaPredicted RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 FANCBQ8NB91 859 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 CYP2W1Q8TAV3 490 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ADAMTS15Q8TE58 950 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TBC1D22AQ8WUA7 517 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 SCAMP4Q969E2 229 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 SARAFQ96BY9 339 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ZBTB9Q96C00 473 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TBC1D31Q96DN5 1066 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 IQCDQ96DY2 449 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TWNKQ96RR1 684 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 YME1L1Q96TA2 773 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ITPAQ9BY32 194 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TRIM54Q9BYV2 358 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 KLC4Q9NSK0 619 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TBC1D23Q9NUY8 699 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 PNPOQ9NVS9 261 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 SIDT1Q9NXL6 827 aaKnown RBP3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 ETAA1Q9NY74 926 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 TMCC3Q9ULS5 477 aa3.52□□□□□ -1.85
DEPDC1-204ENST00000489862 KAT6AQ92794 2004 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 SOS1Q07889 1333 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TRIM43BA6NCK2 446 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 WIPF3A6NGB9 483 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 MANSC4A6NHS7 340 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 AGAP14A8MT82 685 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 H3BNC9 293 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 FOXN3O00409 490 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 FCHO1O14526 889 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 KIF20AO95235 890 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 IL11P20809 199 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 PRDX5P30044 214 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TNNT3P45378 269 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 NDUFV1P49821 464 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 ZNF135P52742 658 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 NXPH1P58417 271 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 ITIH3Q06033 890 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 SRSF4Q08170 494 aaKnown RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 GALNT2Q10471 571 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 HABP2Q14520 560 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 CTXN3Q4LDR2 81 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TMTC4Q5T4D3 741 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 RAP1GAP2Q684P5 730 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TAF2Q6P1X5 1199 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 CATSPERGQ6ZRH7 1159 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 GALNTL5Q7Z4T8 443 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TTC30AQ86WT1 665 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 RASAL3Q86YV0 1011 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 C3orf20Q8ND61 904 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 PSD4Q8NDX1 1056 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 OR56A3Q8NH54 315 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 DDB2Q92466 427 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TRIM43Q96BQ3 446 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 HAPLN3Q96S86 360 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 BAG1Q99933 345 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 DDX23Q9BUQ8 820 aaKnown RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 TPSD1Q9BZJ3 242 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 AMBRA1Q9C0C7 1298 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 CXorf56Q9H5V9 222 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 DBNDD1Q9H9R9 158 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 BRF2Q9HAW0 419 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 IL21RQ9HBE5 538 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 PRDM8Q9NQV8 689 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 ZDHHC7Q9NXF8 308 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 RGL1Q9NZL6 768 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 ZNF70Q9UC06 446 aaPredicted RBP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 NAALADL1Q9UQQ1 740 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 LMTK3Q96Q04 1460 aa3.51□□□□□ -1.85
DEPDC1-204ENST00000489862 GPRASP1Q5JY77 1395 aa3.5□□□□□ -1.85
DEPDC1-204ENST00000489862 FAM170AA1A519 330 aa3.5□□□□□ -1.85
DEPDC1-204ENST00000489862 APOA4P06727 396 aa3.5□□□□□ -1.85
DEPDC1-204ENST00000489862 ANXA2P07355 339 aaKnown RBP3.5□□□□□ -1.85
DEPDC1-204ENST00000489862 CYP21A2P08686 494 aa3.5□□□□□ -1.85
DEPDC1-204ENST00000489862 NR2F6P10588 404 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms