RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 PGM2Q96G03 612 aa18.02■□□□□ 0.47
NPHP4-209ENST00000489180 POMKQ9H5K3 350 aa18.02■□□□□ 0.47
NPHP4-209ENST00000489180 SIK3Q9Y2K2 1263 aa18.02■□□□□ 0.47
NPHP4-209ENST00000489180 CLTCQ00610 1675 aaKnown RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 MAP2K7O14733 419 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 MRASO14807 208 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 CPNE1Q99829 537 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 PAIP1Q9H074 479 aaKnown RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 ITGA11Q9UKX5 1188 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 LRCH1Q9Y2L9 728 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 NDUFAF1Q9Y375 327 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 RBL1P28749 1068 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 MIPP30301 263 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 PSMD7P51665 324 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 ARMCX4Q5H9R4 360 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 DNAJC14Q6Y2X3 702 aaPredicted RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 TMEM26Q6ZUK4 368 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 VN1R5Q7Z5H4 357 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 RNF145Q96MT1 663 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 TRAPPC9Q96Q05 1148 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 SNX8Q9Y5X2 465 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 CNOT3O75175 753 aaKnown RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 FAM98BQ52LJ0 330 aaKnown RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 ZCCHC9Q8N567 271 aaKnown RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 APBB2Q92870 758 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 MARK4Q96L34 752 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 SETD4Q9NVD3 440 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 SYBUQ9NX95 663 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 DPYSL3Q14195 570 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 ARMC6Q6NXE6 501 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 NPNTQ6UXI9 565 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 NSMCE2Q96MF7 247 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 DPY30Q9C005 99 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 C6orf62Q9GZU0 229 aaPredicted RBP18.01■□□□□ 0.47
NPHP4-209ENST00000489180 SALL1Q9NSC2 1324 aa18.01■□□□□ 0.47
NPHP4-209ENST00000489180 A0A1B0GW55 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 CLOCKO15516 846 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 NPM3O75607 178 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 SNUPNO95149 360 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4L2P0CJ85 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4L3P0CJ86 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4L4P0CJ87 422 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4L5P0CJ88 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4L6P0CJ89 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4L7P0CJ90 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 MYBL2P10244 700 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 ZNF268Q14587 947 aaPredicted RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 FAM180AQ6UWF9 173 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 FAM228AQ86W67 206 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 RGS18Q9NS28 235 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DUX4Q9UBX2 424 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 MROH7Q68CQ1 1323 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 MAGEB16A2A368 324 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 BANF1O75531 89 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 BCL10O95999 233 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 SKIV2L2P42285 1042 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 LHX1P48742 406 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 SPANXN3Q5MJ09 141 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 ETNPPLQ8TBG4 499 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 SLC25A13Q9UJS0 675 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 HS6ST1O60243 411 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 PSMG1O95456 288 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 ERVK-10P10266 1014 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 MAPTP10636 758 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 CASP5P51878 434 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 MARC1Q5VT66 337 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 TYW3Q6IPR3 259 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 TPD52L3Q96J77 140 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 ZMYM5Q9UJ78 669 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 DYRK1BQ9Y463 629 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 TECPR2O15040 1411 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 RPS12P25398 132 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 GCNT1Q02742 428 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 MED8Q96G25 268 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 PARVBQ9HBI1 364 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 POLG2Q9UHN1 485 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 CCDC154A6NI56 674 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 TPP1O14773 563 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 TRIM24O15164 1050 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 FSBPO95073 299 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 CCDC130P13994 396 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 RAD23AP54725 363 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 KCTD21Q4G0X4 260 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 KCNT2Q6UVM3 1135 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 KRT78Q8N1N4 520 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 FBXO39Q8N4B4 442 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 SH3GL1Q99961 368 aa18■□□□□ 0.47
NPHP4-209ENST00000489180 GEMIN8Q9NWZ8 242 aaKnown RBP18■□□□□ 0.47
NPHP4-209ENST00000489180 FAM237BA0A1B0GVD1 139 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 RCCD1A6NED2 376 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 TTLL13PA6NNM8 815 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 POMCP01189 267 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 ALADP13716 330 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 RAB14P61106 215 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 MRPS22P82650 360 aaKnown RBP17.99■□□□□ 0.47
NPHP4-209ENST00000489180 MFSD4BQ5TF39 518 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 TRIM48Q8IWZ4 208 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 UBXN6Q9BZV1 441 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 RAD18Q9NS91 495 aa17.99■□□□□ 0.47
NPHP4-209ENST00000489180 VTI1BQ9UEU0 232 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms