RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 LOXL4Q96JB6 756 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 C16orf45Q96MC5 204 aaPredicted RBP17.74■□□□□ 0.43
VIM-205ENST00000485947 DCLK3Q9C098 648 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 THAP2Q9H0W7 228 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 NMUR1Q9HB89 426 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 SPHK2Q9NRA0 654 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 OLA1Q9NTK5 396 aaKnown RBP17.74■□□□□ 0.43
VIM-205ENST00000485947 OSER1Q9NX31 292 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 MARK1Q9P0L2 795 aa17.74■□□□□ 0.43
VIM-205ENST00000485947 GPR179Q6PRD1 2367 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 K7EQS6 105 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 GREM1O60565 184 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 KAT7O95251 611 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 APBB3O95704 486 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 ZBED1O96006 694 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 CYP1A2P05177 515 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 ABCB4P21439 1286 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 PGFP49763 221 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 HADHBP55084 474 aaKnown RBP17.73■□□□□ 0.43
VIM-205ENST00000485947 SNX16P57768 344 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 SCD5Q86SK9 330 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 C11orf74Q86VG3 221 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 TTC30AQ86WT1 665 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 ERICH1Q86X53 443 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 BBS7Q8IWZ6 715 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 ETFBKMTQ8IXQ9 262 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 WDTC1Q8N5D0 677 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 RPLP0P6Q8NHW5 317 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 STK32AQ8WU08 396 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 GAB3Q8WWW8 586 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 EZH1Q92800 747 aaPredicted RBP17.73■□□□□ 0.43
VIM-205ENST00000485947 LRRC4Q9HBW1 653 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 ADAM22Q9P0K1 906 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 DEC1Q9P2X7 70 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 UVRAGQ9P2Y5 699 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 TRIM10Q9UDY6 481 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 STRIP2Q9ULQ0 834 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 TFR2Q9UP52 801 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 MYH10P35580 1976 aa17.73■□□□□ 0.43
VIM-205ENST00000485947 CFAP47Q6ZTR5 3102 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 HRO43593 1189 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 TBX18O95935 607 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 CHKAP35790 457 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 TKTL1P51854 596 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 GSCP56915 257 aaPredicted RBP17.72■□□□□ 0.43
VIM-205ENST00000485947 ETF1P62495 437 aaKnown RBP17.72■□□□□ 0.43
VIM-205ENST00000485947 PDE4CQ08493 712 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 PTP4A2Q12974 167 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 DMC1Q14565 340 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 PKN3Q6P5Z2 889 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 TRMT11Q7Z4G4 463 aaKnown RBP17.72■□□□□ 0.43
VIM-205ENST00000485947 TRIM58Q8NG06 486 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 IPO4Q8TEX9 1081 aaKnown RBP17.72■□□□□ 0.43
VIM-205ENST00000485947 CNTNAP3BQ96NU0 1288 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 ALS2CR12Q96Q35 445 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 XPO6Q96QU8 1125 aaKnown RBP17.72■□□□□ 0.43
VIM-205ENST00000485947 C11orf70Q9BRQ4 267 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 CNTNAP3Q9BZ76 1288 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 CNGB3Q9NQW8 809 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 ARHGEF4Q9NR80 690 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 C2orf42Q9NWW7 574 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 SCINQ9Y6U3 715 aa17.72■□□□□ 0.43
VIM-205ENST00000485947 MACROD2A1Z1Q3 448 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 PRR5-ARHGAP8B1AHC4 643 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 MTA2O94776 668 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 TNNT1P13805 278 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 GABRB2P47870 512 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 DGKEP52429 567 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 YWHAGP61981 247 aaKnown RBP eCLIP17.71■□□□□ 0.43
VIM-205ENST00000485947 ARHGAP8P85298 464 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 PDCLQ13371 301 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 E2F5Q15329 346 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 NAIF1Q69YI7 327 aaPredicted RBP17.71■□□□□ 0.43
VIM-205ENST00000485947 Q6ZNB5 142 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 DNAAF5Q86Y56 855 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 IRGQQ8WZA9 623 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 ARHGEF26Q96DR7 871 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 HSFY1Q96LI6 401 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 MRPL47Q9HD33 250 aaKnown RBP17.71■□□□□ 0.43
VIM-205ENST00000485947 CNOT8Q9UFF9 292 aaKnown RBP17.71■□□□□ 0.43
VIM-205ENST00000485947 MMP17Q9ULZ9 603 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 DUSP10Q9Y6W6 482 aa17.71■□□□□ 0.43
VIM-205ENST00000485947 MAP1BP46821 2468 aaKnown RBP17.71■□□□□ 0.42
VIM-205ENST00000485947 AXIN1O15169 862 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 CACNG3O60359 315 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 TULP3O75386 442 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 RPP40O75818 363 aaKnown RBP17.7■□□□□ 0.42
VIM-205ENST00000485947 ACADSBP45954 432 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 NAP1L1P55209 391 aaKnown RBP17.7■□□□□ 0.42
VIM-205ENST00000485947 GNG11P61952 73 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 LMNB2Q03252 620 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 DMWDQ09019 674 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 ANO4Q32M45 955 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 PTPN20Q4JDL3 420 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 EOGTQ5NDL2 527 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 HEATR6Q6AI08 1181 aaKnown RBP17.7■□□□□ 0.42
VIM-205ENST00000485947 MMS22LQ6ZRQ5 1243 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 PRR23BQ6ZRT6 265 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 CEP68Q76N32 757 aa17.7■□□□□ 0.42
VIM-205ENST00000485947 RSRC2Q7L4I2 434 aaKnown RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms