RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 IGLV3-27P01718 113 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 CEACAM1P13688 526 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 SPINK2P20155 84 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 SLC6A4P31645 630 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 TPMTP51580 245 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 TBX4P57082 545 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 FNDC3BQ53EP0 1204 aaKnown RBP22.44■■□□□ 1.18
USP40-215ENST00000484528 RABEPKQ7Z6M1 372 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 MINDY1Q8N5J2 469 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 PRCCQ92733 491 aaPredicted RBP22.44■■□□□ 1.18
USP40-215ENST00000484528 HSFY1Q96LI6 401 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 ITM2CQ9NQX7 267 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 WSB2Q9NYS7 404 aaPredicted RBP22.44■■□□□ 1.18
USP40-215ENST00000484528 GGA2Q9UJY4 613 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 TBL1XO60907 577 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 GNA14O95837 355 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 TOP3BO95985 862 aaKnown RBP22.43■■□□□ 1.18
USP40-215ENST00000484528 MARSP56192 900 aaKnown RBP22.43■■□□□ 1.18
USP40-215ENST00000484528 ZNF445P59923 1031 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 PLEKHG6Q3KR16 790 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 FAM133BQ5BKY9 247 aaKnown RBP22.43■■□□□ 1.18
USP40-215ENST00000484528 SYCP2LQ5T4T6 812 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 DENND1BQ6P3S1 775 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 METTL3Q86U44 580 aaKnown RBP22.43■■□□□ 1.18
USP40-215ENST00000484528 FAM124AQ86V42 546 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 SCUBE3Q8IX30 993 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 HDDC3Q8N4P3 179 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 ADAM32Q8TC27 787 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 DQX1Q8TE96 717 aaKnown RBP22.43■■□□□ 1.18
USP40-215ENST00000484528 WFIKKN2Q8TEU8 576 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 FOXJ1Q92949 421 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 UBE2TQ9NPD8 197 aaPredicted RBP22.43■■□□□ 1.18
USP40-215ENST00000484528 STIM2Q9P246 746 aa22.43■■□□□ 1.18
USP40-215ENST00000484528 ARHGAP33O14559 1287 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 ACSL4O60488 711 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 FBXO21O94952 628 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 FYNP06241 537 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 ACADMP11310 421 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 PABPC1P11940 636 aaKnown RBP22.42■■□□□ 1.18
USP40-215ENST00000484528 CD70P32970 193 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 SLC11A2P49281 568 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 CAMK4Q16566 473 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 WDR45BQ5MNZ6 344 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 NUGGCQ68CJ6 796 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 NADSYN1Q6IA69 706 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 GJB7Q6PEY0 223 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 ADIPOR2Q86V24 386 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 CREBRFQ8IUR6 639 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 ZCCHC9Q8N567 271 aaKnown RBP22.42■■□□□ 1.18
USP40-215ENST00000484528 FAM149B1Q96BN6 582 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 CRACR2AQ9BSW2 395 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 MIR1-1HGQ9H1L0 117 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 ACP6Q9NPH0 428 aa22.42■■□□□ 1.18
USP40-215ENST00000484528 AKAP13Q12802 2813 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 SPAARA0A1B0GVQ0 90 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 TIMM44O43615 452 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 OPHN1O60890 802 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 LETM1O95202 739 aaPredicted RBP22.41■■□□□ 1.18
USP40-215ENST00000484528 GPD2P43304 727 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 SEMA3BQ13214 749 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 E2F5Q15329 346 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 PIK3R6Q5UE93 754 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 MBLAC2Q68D91 279 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 UNC45BQ8IWX7 931 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 AHI1Q8N157 1196 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.41■■□□□ 1.18
USP40-215ENST00000484528 MYEOVQ96EZ4 313 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 PRICKLE1Q96MT3 831 aaPredicted RBP22.41■■□□□ 1.18
USP40-215ENST00000484528 SLC32A1Q9H598 525 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 SUSD2Q9UGT4 822 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 NAALADL1Q9UQQ1 740 aa22.41■■□□□ 1.18
USP40-215ENST00000484528 MOCS2O96007 188 aaPredicted RBP22.4■■□□□ 1.18
USP40-215ENST00000484528 SYPP08247 313 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 APBA1Q02410 837 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 RING1Q06587 406 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 CAMK2GQ13555 558 aaPredicted RBP22.4■■□□□ 1.18
USP40-215ENST00000484528 PTPRNQ16849 979 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 DCAF12L1Q5VU92 463 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 PIP4P1Q86T03 277 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 OR2T3Q8NH03 318 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 FCRL2Q96LA5 508 aaPredicted RBP22.4■■□□□ 1.18
USP40-215ENST00000484528 TMEM245Q9H330 911 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 PLA2G4CQ9UP65 541 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 CNTN6Q9UQ52 1028 aa22.4■■□□□ 1.18
USP40-215ENST00000484528 NYNRINQ9P2P1 1898 aaKnown RBP22.4■■□□□ 1.18
USP40-215ENST00000484528 THAP12O43422 761 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 GNSP15586 552 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 OXTRP30559 389 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 RPS24P62847 133 aaKnown RBP22.39■■□□□ 1.17
USP40-215ENST00000484528 ARHGAP44Q17R89 818 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 SYPL2Q5VXT5 272 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 KIAA0907Q7Z7F0 614 aaPredicted RBP22.39■■□□□ 1.17
USP40-215ENST00000484528 TAC4Q86UU9 113 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 MFN1Q8IWA4 741 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 HJURPQ8NCD3 748 aaPredicted RBP22.39■■□□□ 1.17
USP40-215ENST00000484528 SERPINB11Q96P15 392 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 NUCKS1Q9H1E3 243 aaKnown RBP22.39■■□□□ 1.17
USP40-215ENST00000484528 LHX5Q9H2C1 402 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 MTG2Q9H4K7 406 aa22.39■■□□□ 1.17
USP40-215ENST00000484528 CYTH4Q9UIA0 394 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms