RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 WDR87Q6ZQQ6 2873 aa11.9□□□□□ -0.5
CCM2-213ENST00000480658 GPR179Q6PRD1 2367 aa11.9□□□□□ -0.51
CCM2-213ENST00000480658 EML5Q05BV3 1969 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 IGHV1OR15-9A0A0B4J2B8 117 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 DCDC2BA2VCK2 349 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 RNF225M0QZC1 329 aaPredicted RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 RNASEH1O60930 286 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 IGLV3-19P01714 112 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 EPHX1P07099 455 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 SERPINF2P08697 491 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 DLDP09622 509 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 PABPC1P11940 636 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 BCKDHBP21953 392 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 CCR1P32246 355 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 RDXP35241 583 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 NNMTP40261 264 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 USP8P40818 1118 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 CDK17Q00537 523 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 ZNF33AQ06730 810 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 ZNF234Q14588 700 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 GEN1Q17RS7 908 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 VWA3BQ502W6 1294 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 RABGAP1LQ5R372 815 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 PIK3R6Q5UE93 754 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 LRSAM1Q6UWE0 723 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 KIAA1324Q6UXG2 1013 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 SCUBE3Q8IX30 993 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 HDDC3Q8N4P3 179 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 ATP6V0D2Q8N8Y2 350 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 OR2T3Q8NH03 318 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 FIBINQ8TAL6 211 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 DQX1Q8TE96 717 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 KAT5Q92993 513 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 TUBGCP2Q9BSJ2 902 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 NUP58Q9BVL2 599 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 CD248Q9HCU0 757 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 POLR3BQ9NW08 1133 aaPredicted RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 USP36Q9P275 1121 aaKnown RBP11.89□□□□□ -0.51
CCM2-213ENST00000480658 SLC6A14Q9UN76 642 aa11.89□□□□□ -0.51
CCM2-213ENST00000480658 SPAG17Q6Q759 2223 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 MED19A0JLT2 244 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 E5RJQ4 531 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 F5H5T6 163 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 TRIM24O15164 1050 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 MSI1O43347 362 aaKnown RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 GDF9O60383 454 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 LSM8O95777 96 aaKnown RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 C7P10643 843 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 CEACAM1P13688 526 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 CSRP1P21291 193 aaKnown RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 PON1P27169 355 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 HLA-FP30511 346 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 IL12RB1P42701 662 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 SULT2A1Q06520 285 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 SLC14A1Q13336 389 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 CAMK2GQ13555 558 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 ARHGAP44Q17R89 818 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 FUT11Q495W5 492 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 FNDC3BQ53EP0 1204 aaKnown RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 RNF219Q5W0B1 726 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 IL27RAQ6UWB1 636 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 C11orf57Q6ZUT1 292 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 SND1Q7KZF4 910 aaKnown RBP eCLIP11.88□□□□□ -0.51
CCM2-213ENST00000480658 CHST9Q7L1S5 443 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 KIAA0907Q7Z7F0 614 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 TMPRSS6Q8IU80 811 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 TMEFF1Q8IYR6 380 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 TMEM35BQ8NCS4 154 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 RLN3Q8WXF3 142 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 ZNF419Q96HQ0 510 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 PPP1R13BQ96KQ4 1090 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 ACOX2Q99424 681 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 CRACR2AQ9BSW2 395 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 PDCL3Q9H2J4 239 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 FAM204AQ9H8W3 233 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 ITM2CQ9NQX7 267 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 ABCB8Q9NUT2 735 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 KIAA1522Q9P206 1035 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 MBD1Q9UIS9 605 aaPredicted RBP11.88□□□□□ -0.51
CCM2-213ENST00000480658 STAP1Q9ULZ2 295 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 CYP8B1Q9UNU6 501 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 INVSQ9Y283 1065 aa11.88□□□□□ -0.51
CCM2-213ENST00000480658 MEI4A8MW99 385 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 UPK3BL1B0FP48 263 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 UPK3BL2E5RIL1 263 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 PES1O00541 588 aaKnown RBP11.87□□□□□ -0.51
CCM2-213ENST00000480658 TBL1XO60907 577 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 LUC7L3O95232 432 aaKnown RBP11.87□□□□□ -0.51
CCM2-213ENST00000480658 TRUB2O95900 331 aaKnown RBP11.87□□□□□ -0.51
CCM2-213ENST00000480658 DNTTP04053 509 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 CFIP05156 583 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 SRPRAP08240 638 aaKnown RBP11.87□□□□□ -0.51
CCM2-213ENST00000480658 SCNN1AP37088 669 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 WASP42768 502 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 PTGER3P43115 390 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 ARID5BQ14865 1188 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 CCDC6Q16204 474 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 DPCR1Q3MIW9 517 aa11.87□□□□□ -0.51
CCM2-213ENST00000480658 FAM133BQ5BKY9 247 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms