RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RIF1Q5UIP0 2472 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ATG2BQ96BY7 2078 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 SHISA7A6NL88 538 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 LRRIQ3A6PVS8 624 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TADA3O75528 432 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF202O95125 648 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 P4HA1P13674 534 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 BMP6P22004 513 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 BDNFP23560 247 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 CCNE1P24864 410 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ANXA13P27216 316 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 CASP4P49662 377 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 KRTAP10-2P60368 255 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 CSTF1Q05048 431 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 LRRC32Q14392 662 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF268Q14587 947 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 KCNB1Q14721 858 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 PPP2R5DQ14738 602 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 CCDC142Q17RM4 750 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF699Q32M78 642 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF667Q5HYK9 610 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 MDH1BQ5I0G3 518 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 CDKAL1Q5VV42 579 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TDRD10Q5VZ19 366 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TXNDC8Q6A555 127 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 MON1AQ86VX9 555 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 RALGPS2Q86X27 583 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 MAML2Q8IZL2 1156 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ABHD4Q8TB40 342 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 MYCBPAPQ8TBZ2 947 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 GRIN3AQ8TCU5 1115 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 PLEKHO2Q8TD55 490 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 PCED1BQ96HM7 432 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ZFYVE19Q96K21 471 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 LRRC3BQ96PB8 259 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 MRPL45Q9BRJ2 306 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ELOVL4Q9GZR5 314 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 NIF3L1Q9GZT8 377 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 GZF1Q9H116 711 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 XYLT2Q9H1B5 865 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 GOLPH3LQ9H4A5 285 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TRPC7Q9HCX4 862 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 CRTAC1Q9NQ79 661 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 PRMT8Q9NR22 394 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TDP1Q9NUW8 608 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TRAF3IP3Q9Y228 551 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 ZFHX2Q9C0A1 2572 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 MYO16Q9Y6X6 1858 aa7.23□□□□□ -1.25
CCDC88A-213ENST00000476903 TRAV19A0A0A6YYK7 116 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 GOLGA6L4A6NEF3 574 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 A8MXQ7 604 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 SPECC1L-ADORA2AF8WAN1 911 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 H3BS24 57 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 IKBKBO14920 756 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 MAPK13O15264 365 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 NUAK1O60285 661 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 KINO60870 393 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 LRIG2O94898 1065 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 LMNAP02545 664 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 C4BPAP04003 597 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 USP17L7P0C7H9 530 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 CHRNB1P11230 501 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 PFKLP17858 780 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 PTPN1P18031 435 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 NR2F2P24468 414 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 RPL13P26373 211 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 PPP3CCP48454 512 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 PDE6CP51160 858 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 CCR3P51677 355 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 VAMP7P51809 220 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 DLG4P78352 724 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 NUCB2P80303 420 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM160A1Q05DH4 1040 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 MTAPQ13126 283 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 NFIL3Q16649 462 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 SGSM1Q2NKQ1 1148 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 ITPRIPL2Q3MIP1 535 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 ZACNQ401N2 412 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 CC2D1AQ6P1N0 951 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 DENND5BQ6ZUT9 1274 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 ADSSL1Q8N142 457 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 GUF1Q8N442 669 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 B3GALNT2Q8NCR0 500 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 ATRIPQ8WXE1 791 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 USP13Q92995 863 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 TNIP3Q96KP6 325 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 CITED4Q96RK1 184 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM126AQ9BYI3 521 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 DPEP3Q9H4B8 488 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 SMYD3Q9H7B4 428 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 LMAN1LQ9HAT1 526 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 PARD6AQ9NPB6 346 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 GKN1Q9NS71 199 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 ZSCAN32Q9NX65 697 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 GTSE1Q9NYZ3 720 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 CCL26Q9Y258 94 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 PCDHGA2Q9Y5H1 932 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 R4GN57 208 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 ATP8B3O60423 1300 aa7.22□□□□□ -1.25
CCDC88A-213ENST00000476903 C2orf78A6NCI8 922 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms