RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ADAMTS9Q9P2N4 1935 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 C4orf47A7E2U8 309 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 KHNYNO15037 678 aaKnown RBP14.66□□□□□ -0.06
UPF3A-204ENST00000475218 C7P10643 843 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 CD70P32970 193 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 CLCN1P35523 988 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 MTIF2P46199 727 aaKnown RBP14.66□□□□□ -0.06
UPF3A-204ENST00000475218 KCNMA1Q12791 1236 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 SYT12Q8IV01 421 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 CYB5D2Q8WUJ1 264 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 CPXM1Q96SM3 734 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 NUCKS1Q9H1E3 243 aaKnown RBP14.66□□□□□ -0.06
UPF3A-204ENST00000475218 GGA2Q9UJY4 613 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 TLR6Q9Y2C9 796 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 CHD8Q9HCK8 2581 aa14.66□□□□□ -0.06
UPF3A-204ENST00000475218 FOXN3O00409 490 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 NPC1O15118 1278 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 TBL1XO60907 577 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ZNF217O75362 1048 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 HLA-EP13747 358 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ACADSBP45954 432 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ZNF445P59923 1031 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 RPS24P62847 133 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ZNF33AQ06730 810 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 NNTQ13423 1086 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 BYSLQ13895 437 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 MAN2A1Q16706 1144 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 TRIM61Q5EBN2 209 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 MPP7Q5T2T1 576 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 NUGGCQ68CJ6 796 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 IL31Q6EBC2 164 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 KIAA1324Q6UXG2 1013 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 CHST9Q7L1S5 443 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 METTL3Q86U44 580 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 PASD1Q8IV76 773 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 UNC45BQ8IWX7 931 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 FAM149B1Q96BN6 582 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 MYO19Q96H55 970 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SAMSN1Q9NSI8 373 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 DNAJC12Q9UKB3 198 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 INTS6Q9UL03 887 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 PCDHGC3Q9UN70 934 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ASCC3Q8N3C0 2202 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 IRAK2O43187 625 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 AP5Z1O43299 807 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 MED7O43513 233 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 PABPC1P11940 636 aaKnown RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ERCC5P28715 1186 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 USP8P40818 1118 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SLC11A2P49281 568 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 CAMK2GQ13555 558 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 VWA3BQ502W6 1294 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 FSCBQ5H9T9 825 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 N4BP2L1Q5TBK1 243 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SLC23A3Q6PIS1 610 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SLC36A4Q6YBV0 504 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SLC47A2Q86VL8 602 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ZNF366Q8N895 744 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ZNF419Q96HQ0 510 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 HSPA12BQ96MM6 686 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SERPINB11Q96P15 392 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 TUBGCP2Q9BSJ2 902 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ADAM33Q9BZ11 813 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 NUP62CLQ9H1M0 184 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 NDST4Q9H3R1 872 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 PRDM16Q9HAZ2 1276 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 CAPN10Q9HC96 672 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 ITM2CQ9NQX7 267 aa14.65□□□□□ -0.06
UPF3A-204ENST00000475218 WSB2Q9NYS7 404 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-204ENST00000475218 SPEGQ15772 3267 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 GIPC1O14908 333 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 SART1O43290 800 aaKnown RBP14.64□□□□□ -0.07
UPF3A-204ENST00000475218 TIMM44O43615 452 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 IGLV3-19P01714 112 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 TPMTP51580 245 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 YWHAZP63104 245 aaKnown RBP14.64□□□□□ -0.07
UPF3A-204ENST00000475218 ZC3H12AQ5D1E8 599 aaKnown RBP14.64□□□□□ -0.07
UPF3A-204ENST00000475218 MS4A13Q5J8X5 152 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 TMPRSS6Q8IU80 811 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 FAM71AQ8IYT1 594 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 CFAP52Q8N1V2 620 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 GPT2Q8TD30 523 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 WFIKKN2Q8TEU8 576 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 UCMAQ8WVF2 138 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 GOLGA1Q92805 767 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 SLC2A13Q96QE2 648 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 IRX2Q9BZI1 471 aaPredicted RBP14.64□□□□□ -0.07
UPF3A-204ENST00000475218 POPDC2Q9HBU9 364 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 STIM2Q9P246 746 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 NUMA1Q14980 2115 aa14.64□□□□□ -0.07
UPF3A-204ENST00000475218 KCNK5O95279 499 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 TRUB2O95900 331 aaKnown RBP14.63□□□□□ -0.07
UPF3A-204ENST00000475218 ERBB2P04626 1255 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 EPHX1P07099 455 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 ENGP17813 658 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 LMAN2Q12907 356 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 STARD3Q14849 445 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 PTPN20Q4JDL3 420 aa14.63□□□□□ -0.07
UPF3A-204ENST00000475218 OTUD1Q5VV17 481 aaPredicted RBP14.63□□□□□ -0.07
UPF3A-204ENST00000475218 MBLAC2Q68D91 279 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms