RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 TBC1D14Q9P2M4 693 aa2.31□□□□□ -2.04
CCDC39-203ENST00000473854 SLC8A2Q9UPR5 921 aa2.31□□□□□ -2.04
CCDC39-203ENST00000473854 LAMP3Q9UQV4 416 aa2.31□□□□□ -2.04
CCDC39-203ENST00000473854 BAZ1AQ9NRL2 1556 aaPredicted RBP2.31□□□□□ -2.04
CCDC39-203ENST00000473854 SMARCA4P51532 1647 aa2.31□□□□□ -2.04
CCDC39-203ENST00000473854 CA12O43570 354 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 RRP9O43818 475 aaKnown RBP2.3□□□□□ -2.04
CCDC39-203ENST00000473854 POU2F2P09086 479 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 RBL1P28749 1068 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 PDLIM4P50479 330 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 RAE1P78406 368 aaKnown RBP2.3□□□□□ -2.04
CCDC39-203ENST00000473854 PGM5Q15124 567 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 USP49Q70CQ1 688 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 CTU1Q7Z7A3 348 aaKnown RBP2.3□□□□□ -2.04
CCDC39-203ENST00000473854 CLIP4Q8N3C7 705 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 METTL25Q8N6Q8 603 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 FAM216AQ8WUB2 273 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 AKAP1Q92667 903 aaKnown RBP eCLIP2.3□□□□□ -2.04
CCDC39-203ENST00000473854 ANKRD9Q96BM1 317 aaPredicted RBP2.3□□□□□ -2.04
CCDC39-203ENST00000473854 RUNDC1Q96C34 613 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 HIST1H2AAQ96QV6 131 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 ABHD10Q9NUJ1 306 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 TRHDEQ9UKU6 1024 aa2.3□□□□□ -2.04
CCDC39-203ENST00000473854 PRDM2Q13029 1718 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MROH2BQ7Z745 1585 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MBD3L4A6NDZ8 208 aaPredicted RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MBD3L3A6NE82 208 aaPredicted RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 BECN2A8MW95 431 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 VWA5AO00534 786 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MARCH6O60337 910 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ZRANB2O95218 330 aaKnown RBP eCLIP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MBPP02686 304 aaPredicted RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 LCATP04180 440 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 NDUFS1P28331 727 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 PTDSS1P48651 473 aaKnown RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 AGFG1P52594 562 aaKnown RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 KRTAP10-8P60410 259 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ZP1P60852 638 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ABATP80404 500 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ARHGEF7Q14155 803 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 PLCB4Q15147 1175 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ANXA2RQ3ZCQ2 193 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ASPHD1Q5U4P2 390 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 DENND1CQ8IV53 801 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 FAM217AQ8IXS0 508 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 CELF5Q8N6W0 485 aaKnown RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 C11orf44Q8N8P7 122 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MVB12AQ96EY5 273 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ZDHHC12Q96GR4 267 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ZNF845Q96IR2 970 aaPredicted RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 PKP4Q99569 1192 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 ACO2Q99798 780 aaKnown RBP2.29□□□□□ -2.04
CCDC39-203ENST00000473854 GFRA4Q9GZZ7 299 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 MAP6D1Q9H9H5 199 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 DONSONQ9NYP3 566 aa2.29□□□□□ -2.04
CCDC39-203ENST00000473854 CECR2Q9BXF3 1484 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 IGKV3D-15A0A087WSY6 115 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 FAM227AF5H4B4 570 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 PRYO14603 147 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 EDIL3O43854 480 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 LMX1BO60663 402 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 INMTO95050 263 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 HSD3B2P26439 372 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 RECQLP46063 649 aaPredicted RBP2.28□□□□□ -2.04
CCDC39-203ENST00000473854 RAB1AP62820 205 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 TUBA1BP68363 451 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 FSCBQ5H9T9 825 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.28□□□□□ -2.04
CCDC39-203ENST00000473854 STPG1Q5TH74 334 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 DHRS13Q6UX07 377 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 SLC16A12Q6ZSM3 486 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 TCP11L2Q8N4U5 519 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 OR14A16Q8NHC5 309 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 MAML1Q92585 1016 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 PMM1Q92871 262 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 FBXO17Q96EF6 278 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 FAM126AQ9BYI3 521 aaPredicted RBP2.28□□□□□ -2.04
CCDC39-203ENST00000473854 SLC7A10Q9NS82 523 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 SLC27A6Q9Y2P4 619 aa2.28□□□□□ -2.04
CCDC39-203ENST00000473854 COL15A1P39059 1388 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 A0A088AWK7 358 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 A0A1W2PPL8 197 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 AGPSO00116 658 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 CLSTN1O94985 981 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 APOHP02749 345 aaPredicted RBP2.27□□□□□ -2.05
CCDC39-203ENST00000473854 VCAM1P19320 739 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 COPAP53621 1224 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 ATP12AP54707 1039 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 PMP22Q01453 160 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 ITKQ08881 620 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 DMWDQ09019 674 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 STK3Q13188 491 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 ODF1Q14990 250 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 PTPN21Q16825 1174 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 DCAF12L2Q5VW00 463 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 HMBOX1Q6NT76 420 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 CLEC9AQ6UXN8 241 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 CYB5R4Q7L1T6 521 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 FJX1Q86VR8 437 aa2.27□□□□□ -2.05
CCDC39-203ENST00000473854 CAMK1DQ8IU85 385 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms