RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FASTKD5Q7L8L6 764 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 VSIG10LQ86VR7 867 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 IGDCC3Q8IVU1 814 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SLC15A3Q8IY34 581 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ST13P4Q8IZP2 240 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PGAM4Q8N0Y7 254 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PDIK1LQ8N165 341 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PIK3C3Q8NEB9 887 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PRPF31Q8WWY3 499 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ATG4AQ8WYN0 398 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PPP1R16BQ96T49 567 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 VPS37BQ9H9H4 285 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 FBXO8Q9NRD0 319 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 FBXL21Q9UKT6 434 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SH3GLB1Q9Y371 365 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SFI1A8K8P3 1242 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PARNO95453 639 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 JUNDP17535 347 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TBXAS1P24557 533 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 POLD2P49005 469 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 HLCSP50747 726 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PIGHQ14442 188 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ZBED5Q49AG3 693 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 MFSD14CQ5VZR4 134 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 C19orf48Q6RUI8 117 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PADI6Q6TGC4 694 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 FAM47EQ6ZV65 393 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CYP2W1Q8TAV3 490 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 HAUS1Q96CS2 278 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CGRRF1Q99675 332 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CENPKQ9BS16 269 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 IP6K2Q9UHH9 426 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TESPA1A2RU30 521 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 B2RBV5 119 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 H3BNH8 94 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 K7ENM7 598 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SLCO1A2P46721 670 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 KRT76Q01546 638 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CYLC2Q14093 348 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 COG2Q14746 738 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 MOGQ16653 247 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TFDP3Q5H9I0 405 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 C9orf131Q5VYM1 1079 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 KCTD1Q719H9 257 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CHPFQ8IZ52 775 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PPM1NQ8N819 430 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 RDH12Q96NR8 316 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 C1QTNF3Q9BXJ4 246 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SUCOQ9UBS9 1254 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PRR5-ARHGAP8B1AHC4 643 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 MAP3K7O43318 606 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 MRPS14O60783 128 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PRR35P0CG20 571 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SRGAP2CP0DJJ0 459 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CD9P21926 228 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PPARGP37231 505 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 GPD2P43304 727 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 IGBP1P78318 339 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ARHGAP8P85298 464 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 KBTBD12Q3ZCT8 623 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 KCTD11Q693B1 232 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CCDC62Q6P9F0 684 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SLC2A14Q8TDB8 520 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 DQX1Q8TE96 717 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF606Q8WXB4 792 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 FATE1Q969F0 183 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TMA16Q96EY4 203 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SLC4A5Q9BY07 1137 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ZCWPW2A0A1B0GU75 182 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ERI2A8K979 691 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 G3V2L1 256 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DYNC1LI2O43237 492 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 AKAP10O43572 662 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 NDUFS2O75306 463 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DGAT1O75907 488 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TNNI1P19237 187 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PGM1P36871 562 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TKTL1P51854 596 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 LRRC23Q53EV4 343 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF746Q6NUN9 644 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MINDY2Q8NBR6 621 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF566Q969W8 418 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PWWP2AQ96N64 755 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MRPS26Q9BYN8 205 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TBX20Q9UMR3 447 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 C7orf72A4D263 438 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ACOX3O15254 700 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 OR6B1O95007 311 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SNX4O95219 450 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 RBP3P10745 1247 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZFXP17010 805 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 KCNA5P22460 613 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 GDF10P55107 478 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PRR16Q569H4 304 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TRNP1Q6NT89 227 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ITIH5Q86UX2 942 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CFAP36Q96G28 342 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 C1orf74Q96LT6 269 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF670Q9BS34 389 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ACP6Q9NPH0 428 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms