RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 INTS2Q9H0H0 1204 aaKnown RBP17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 FSCN3Q9NQT6 498 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 WSB2Q9NYS7 404 aaPredicted RBP17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 MUC22E2RYF6 1773 aaPredicted RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 IGF2RP11717 2491 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 FGFR1OPO95684 399 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 EPHX1P07099 455 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 RPL34P49207 117 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 SLC11A2P49281 568 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 COPAP53621 1224 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 WDR45BQ5MNZ6 344 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 MPP7Q5T2T1 576 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 CHST9Q7L1S5 443 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 KIAA0907Q7Z7F0 614 aaPredicted RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 RGL4Q8IZJ4 473 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 DEFB124Q8NES8 71 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 PRCCQ92733 491 aaPredicted RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 AZIN2Q96A70 460 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 TOE1Q96GM8 510 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 GTPBP2Q9BX10 602 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 ABCB8Q9NUT2 735 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 SUSD2Q9UGT4 822 aa17.25■□□□□ 0.35
CCDC28B-204ENST00000469003 UPK3BL1B0FP48 263 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 KCNJ18B7U540 433 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 UPK3BL2E5RIL1 263 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 ARHGAP33O14559 1287 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 IRAK2O43187 625 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 ACSL4O60488 711 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 IGLV3-19P01714 112 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 SYPP08247 313 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 KRT5P13647 590 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 OXTRP30559 389 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 GPD2P43304 727 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 TPMTP51580 245 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 SGSHP51688 502 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 TBX4P57082 545 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 SEMA3BQ13214 749 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 MEA1Q16626 185 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 PIK3R6Q5UE93 754 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 AHI1Q8N157 1196 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 HDDC3Q8N4P3 179 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 CADM4Q8NFZ8 388 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 MIS12Q9H081 205 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 SLC32A1Q9H598 525 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 GGA2Q9UJY4 613 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 NFE2L3Q9Y4A8 694 aa17.24■□□□□ 0.35
CCDC28B-204ENST00000469003 ZZEF1O43149 2961 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 SART1O43290 800 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 OPHN1O60890 802 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 FYNP06241 537 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 PROS1P07225 676 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 ACADMP11310 421 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 PABPC1P11940 636 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 HLA-EP13747 358 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 GNSP15586 552 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 SLC6A4P31645 630 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 ACADSBP45954 432 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 NNTQ13423 1086 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 CAMK2GQ13555 558 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 FNDC3BQ53EP0 1204 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 FAM133BQ5BKY9 247 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 RFWD3Q6PCD5 774 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 PIP4P1Q86T03 277 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 ADIPOR2Q86V24 386 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 MINDY1Q8N5J2 469 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 ZNF557Q8N988 423 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 OR2T3Q8NH03 318 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 WFDC5Q8TCV5 224 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 DQX1Q8TE96 717 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 CYB5D2Q8WUJ1 264 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 DNASE2BQ8WZ79 361 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 SERPINB11Q96P15 392 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 GPR174Q9BXC1 333 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 TMEM245Q9H330 911 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 UBE2TQ9NPD8 197 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 ST7Q9NRC1 585 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 PLA2G4CQ9UP65 541 aa17.23■□□□□ 0.35
CCDC28B-204ENST00000469003 GOLGA6L7A0A1B0GV03 622 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 MEI4A8MW99 385 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 MED7O43513 233 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 TBL1XO60907 577 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 C7P10643 843 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 MAOBP27338 520 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 FOXC1Q12948 553 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 PLEKHG6Q3KR16 790 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 MBLAC2Q68D91 279 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 NADSYN1Q6IA69 706 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 DENND1BQ6P3S1 775 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 BEND5Q7L4P6 421 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 ENOSF1Q7L5Y1 443 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 SCUBE3Q8IX30 993 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 STK32AQ8WU08 396 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 FAM149B1Q96BN6 582 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 FCRL2Q96LA5 508 aaPredicted RBP17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 DDX50Q9BQ39 737 aaKnown RBP17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 NUP58Q9BVL2 599 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 SLC4A5Q9BY07 1137 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 DNAAF2Q9NVR5 837 aaKnown RBP17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 KIAA1468Q9P260 1216 aa17.22■□□□□ 0.35
CCDC28B-204ENST00000469003 RWDD2AQ9UIY3 292 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms