RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 KCTD13Q8WZ19 329 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 TFAP2BQ92481 460 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 GSDMAQ96QA5 445 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ZSWIM1Q9BR11 485 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ZDHHC5Q9C0B5 715 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 TMEM245Q9H330 911 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 IL21RQ9HBE5 538 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 CNGB3Q9NQW8 809 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ABCC13Q9NSE7 274 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ABCB8Q9NUT2 735 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 EIF2B4Q9UI10 523 aaKnown RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 SLCO1B1Q9Y6L6 691 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 MUC22E2RYF6 1773 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 PIK3R2O00459 728 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 BCAT2O15382 392 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-204ENST00000462475 LATS1O95835 1130 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 TBXAS1P24557 533 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-204ENST00000462475 ZNF445P59923 1031 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 LRRC63Q05C16 580 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 PTPRNQ16849 979 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 ADGRF1Q5T601 910 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 MSANTD2Q6P1R3 559 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 TMEM270Q6UE05 265 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 ADIPOR2Q86V24 386 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 SCML4Q8N228 414 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.78■□□□□ 0.28
COL7A1-204ENST00000462475 SPATA20Q8TB22 786 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 WFDC5Q8TCV5 224 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 KAT5Q92993 513 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 TMA16Q96EY4 203 aaKnown RBP16.78■□□□□ 0.28
COL7A1-204ENST00000462475 NUP58Q9BVL2 599 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 LHX5Q9H2C1 402 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 GGA2Q9UJY4 613 aa16.78■□□□□ 0.28
COL7A1-204ENST00000462475 SMC2O95347 1197 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 CALCAP01258 141 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 FTH1P19P0C7X4 201 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 PABPC1P11940 636 aaKnown RBP16.77■□□□□ 0.28
COL7A1-204ENST00000462475 RDXP35241 583 aaKnown RBP16.77■□□□□ 0.28
COL7A1-204ENST00000462475 FMO5P49326 533 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 PMF1Q6P1K2 205 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 LCLAT1Q6UWP7 414 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 KIAA0907Q7Z7F0 614 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-204ENST00000462475 PNPLA1Q8N8W4 532 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 ENGASEQ8NFI3 743 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 C1orf216Q8TAB5 229 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 CLEC4CQ8WTT0 213 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 C6orf106Q9H6K1 298 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-204ENST00000462475 FNDC3AQ9Y2H6 1198 aaKnown RBP16.77■□□□□ 0.28
COL7A1-204ENST00000462475 PCDHB9Q9Y5E1 797 aa16.77■□□□□ 0.28
COL7A1-204ENST00000462475 DSPP15924 2871 aaKnown RBP16.76■□□□□ 0.27
COL7A1-204ENST00000462475 GOLGA6L7A0A1B0GV03 622 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 FAM221BA6H8Z2 402 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 M0QYV0 167 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 RNF225M0QZC1 329 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-204ENST00000462475 CBFA2T3O75081 653 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 IGLV3-27P01718 113 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 PAEPP09466 180 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 BRD2P25440 801 aaKnown RBP16.76■□□□□ 0.27
COL7A1-204ENST00000462475 SLC6A4P31645 630 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 CD70P32970 193 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 ACSL1P33121 698 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 FAM133BQ5BKY9 247 aaKnown RBP16.76■□□□□ 0.27
COL7A1-204ENST00000462475 MBLAC2Q68D91 279 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 RFWD3Q6PCD5 774 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 AHI1Q8N157 1196 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 SLC35F5Q8WV83 523 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 SNX19Q92543 992 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 SMARCE1Q969G3 411 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 NT5C1BQ96P26 610 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 GAREM1Q9H706 876 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 PCOLCE2Q9UKZ9 415 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 KIAA1257Q9ULG3 409 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.76■□□□□ 0.27
COL7A1-204ENST00000462475 PLA2G4CQ9UP65 541 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 PCDHB4Q9Y5E5 795 aa16.76■□□□□ 0.27
COL7A1-204ENST00000462475 A0A1B0GVT2 93 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 TBL1XO60907 577 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 CER1O95813 267 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 DLDP09622 509 aaKnown RBP16.75■□□□□ 0.27
COL7A1-204ENST00000462475 C7P10643 843 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 CD44P16070 742 aaKnown RBP16.75■□□□□ 0.27
COL7A1-204ENST00000462475 MATKP42679 507 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 PIK3R6Q5UE93 754 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 PPM1KQ8N3J5 372 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 ADAMTS14Q8WXS8 1223 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 IRGQQ8WZA9 623 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 PRICKLE1Q96MT3 831 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-204ENST00000462475 PCED1AQ9H1Q7 454 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 METTL14Q9HCE5 456 aaKnown RBP16.75■□□□□ 0.27
COL7A1-204ENST00000462475 PRSS16Q9NQE7 514 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 TM7SF3Q9NS93 570 aa16.75■□□□□ 0.27
COL7A1-204ENST00000462475 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-204ENST00000462475 ACSL4O60488 711 aa16.74■□□□□ 0.27
COL7A1-204ENST00000462475 LTFP02788 710 aa16.74■□□□□ 0.27
COL7A1-204ENST00000462475 ZNF883P0CG24 379 aa16.74■□□□□ 0.27
COL7A1-204ENST00000462475 CSNK1EP49674 416 aaKnown RBP16.74■□□□□ 0.27
COL7A1-204ENST00000462475 RPS14P62263 151 aaKnown RBP16.74■□□□□ 0.27
COL7A1-204ENST00000462475 CNGA2Q16280 664 aa16.74■□□□□ 0.27
COL7A1-204ENST00000462475 HLA-BQ31612 363 aa16.74■□□□□ 0.27
COL7A1-204ENST00000462475 CCDC40Q4G0X9 1142 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms