RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 CORO1CQ9ULV4 474 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-202ENST00000459727 TRIM33Q9UPN9 1127 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 LRCH1Q9Y2L9 728 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 USP3Q9Y6I4 520 aa9.11□□□□□ -0.95
HDAC3-202ENST00000459727 GOLGA8QA0A0J9YX86 632 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ARHGEF37A1IGU5 675 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GOLGA8OA6NCC3 632 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 TMEM114B3SHH9 223 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 C9IYK1 514 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GOLGA8NF8WBI6 632 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 RNF103O00237 685 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 TIMM44O43615 452 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 MPOP05164 745 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 RPSAP08865 295 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CSH1P0DML2 217 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CSH2P0DML3 217 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 FGFR1P11362 822 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 NPR3P17342 541 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 HOXA11P31270 313 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 SPRP35270 261 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PGM1P36871 562 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PSMC4P43686 418 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 POLD2P49005 469 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CSE1LP55060 971 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GJA9P57773 515 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 AP2B1P63010 937 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 MRPS5P82675 430 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GBE1Q04446 702 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 SLC34A1Q06495 639 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ASPHQ12797 758 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 OVGP1Q12889 678 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 BLMHQ13867 455 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GRB14Q14449 540 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PRPSAP1Q14558 356 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GSTA3Q16772 222 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ACCSLQ4AC99 568 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PLEKHG4Q58EX7 1191 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 FSCBQ5H9T9 825 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 MARCH8Q5T0T0 291 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 MAP3K21Q5TCX8 1036 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CASC4Q6P4E1 433 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 AAGABQ6PD74 315 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PACS1Q6VY07 963 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ZNF534Q76KX8 674 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 BNIPLQ7Z465 357 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 DPP9Q86TI2 863 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PRPF39Q86UA1 669 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ARID3BQ8IVW6 561 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 TAB3Q8N5C8 712 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 C7orf31Q8N865 590 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PDCD7Q8N8D1 485 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 COLGALT1Q8NBJ5 622 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 B3GALNT2Q8NCR0 500 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 RDH11Q8TC12 318 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PIWIL2Q8TC59 973 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 RNF139Q8WU17 664 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 DNAJC9Q8WXX5 260 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 WNT8BQ93098 351 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 NT5C3BQ969T7 300 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 SLC10A4Q96EP9 437 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PGAP3Q96FM1 320 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 THOC1Q96FV9 657 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CLMNQ96JQ2 1002 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ZNF668Q96K58 619 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 TSNARE1Q96NA8 513 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 SLC2A13Q96QE2 648 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 KCTD15Q96SI1 283 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 NPY6RQ99463 290 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CADM1Q9BY67 442 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 KATNBL1Q9H079 304 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 DENND2DQ9H6A0 471 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 KCNK13Q9HB14 408 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 ARHGEF4Q9NR80 690 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PCMTD2Q9NV79 361 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 GPATCH2LQ9NWQ4 482 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 BFARQ9NZS9 450 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 KANSL3Q9P2N6 904 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PPARGC1AQ9UBK2 798 aaKnown RBP9.1□□□□□ -0.95
HDAC3-202ENST00000459727 TUBGCP4Q9UGJ1 667 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PTCH2Q9Y6C5 1203 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CDY2AQ9Y6F7 541 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 CDY1Q9Y6F8 540 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 SCN4AP35499 1836 aa9.1□□□□□ -0.95
HDAC3-202ENST00000459727 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-202ENST00000459727 IQCA1LA6NCM1 817 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 A8MUI8 341 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 CAPN14A8MX76 684 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 EEF2KO00418 725 aaKnown RBP9.09□□□□□ -0.95
HDAC3-202ENST00000459727 SLC22A2O15244 555 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 MAP3K7O43318 606 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 AVILO75366 819 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 GPR32O75388 356 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 TM7SF2O76062 418 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 USP1O94782 785 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 DDNO94850 711 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-202ENST00000459727 PSMG1O95456 288 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 METTL18O95568 372 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 FAM200BP0CF97 657 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 SRGAP2BP0DMP2 458 aa9.09□□□□□ -0.95
HDAC3-202ENST00000459727 LCP1P13796 627 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms