RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 SYCE3A1L190 88 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 KCNU1A8MYU2 1149 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 TEX33O43247 280 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 TIMM44O43615 452 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 TBL1XO60907 577 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 LSM8O95777 96 aaKnown RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 MOCS2O96007 188 aaPredicted RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 GABRG2P18507 467 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 HLA-FP30511 346 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 GBP1P32455 592 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 NOS2P35228 1153 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 STAT1P42224 750 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 RNASE9P60153 205 aaKnown RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 RPS24P62847 133 aaKnown RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 CDR2Q01850 454 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 SPEM2Q0P670 501 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 IQCB1Q15051 598 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 USP39Q53GS9 565 aaKnown RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 C2CD6Q53TS8 623 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 MS4A13Q5J8X5 152 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 MPP7Q5T2T1 576 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 RNF43Q68DV7 783 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 KIAA1211LQ6NV74 962 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 ANKS1BQ7Z6G8 1248 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 ZNF677Q86XU0 584 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 XYLT1Q86Y38 959 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 ZDHHC17Q8IUH5 632 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 CFAP52Q8N1V2 620 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 PGBD3Q8N328 593 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 OLIG1Q8TAK6 271 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 WFDC5Q8TCV5 224 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 ERLEC1Q96DZ1 483 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 BTN2A3PQ96KV6 586 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 GABRG3Q99928 467 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 NUCKS1Q9H1E3 243 aaKnown RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 DUSP15Q9H1R2 295 aaPredicted RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 FAM204AQ9H8W3 233 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 CD248Q9HCU0 757 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 PARD6AQ9NPB6 346 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 RTN4Q9NQC3 1192 aaKnown RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 DDIT4Q9NX09 232 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 STIM2Q9P246 746 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 BCCIPQ9P287 314 aaKnown RBP eCLIP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 THAP10Q9P2Z0 257 aaPredicted RBP13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 RAD54BQ9Y620 910 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 STON1Q9Y6Q2 735 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 SDK1Q7Z5N4 2213 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 PLXND1Q9Y4D7 1925 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 SYNJ2BP-COX16A0A087WUM0 186 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 DAB1O75553 588 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 APOEP02649 317 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 CYP1A1P04798 512 aaPredicted RBP13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 MATKP42679 507 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 NOMO3P69849 1222 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 FMO1Q01740 532 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 ENPP2Q13822 863 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 PLK5Q496M5 336 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 NAA35Q5VZE5 725 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 KIAA0907Q7Z7F0 614 aaPredicted RBP13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 ADIPOR2Q86V24 386 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 LGI2Q8N0V4 545 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 FRMD1Q8N878 549 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 ATP6V0D2Q8N8Y2 350 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 HJURPQ8NCD3 748 aaPredicted RBP13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 UCMAQ8WVF2 138 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 RLN3Q8WXF3 142 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 SORCS1Q8WY21 1168 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 PRICKLE1Q96MT3 831 aaPredicted RBP13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 NAP1L5Q96NT1 182 aaPredicted RBP13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 PCDHB18PQ96TA0 734 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 NPY6RQ99463 290 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 ADAM33Q9BZ11 813 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 CIPCQ9C0C6 399 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 ABCB8Q9NUT2 735 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 COX16Q9P0S2 106 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 CALCOCO1Q9P1Z2 691 aa13.21□□□□□ -0.29
PRPF40A-203ENST00000448428 EP300Q09472 2414 aaPredicted RBP13.21□□□□□ -0.3
PRPF40A-203ENST00000448428 GPR179Q6PRD1 2367 aa13.21□□□□□ -0.3
PRPF40A-203ENST00000448428 NUP205Q92621 2012 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 M0QYT0 321 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 NPC1O15118 1278 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 SLC2A3P11169 496 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 PABPC1P11940 636 aaKnown RBP13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 TFE3P19532 575 aaPredicted RBP13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 TACR2P21452 398 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 BCKDHBP21953 392 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 CCR1P32246 355 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 CD70P32970 193 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 SCNN1AP37088 669 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 IL12RB1P42701 662 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 ARID5AQ03989 594 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 NME3Q13232 169 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 ZNF234Q14588 700 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 EIF4HQ15056 248 aaKnown RBP13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 FAM102AQ5T9C2 384 aaPredicted RBP13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 OTUD1Q5VV17 481 aaPredicted RBP13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 RAP1GAP2Q684P5 730 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 CHST9Q7L1S5 443 aa13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 GPR161Q8N6U8 529 aaKnown RBP13.2□□□□□ -0.3
PRPF40A-203ENST00000448428 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms