RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 SLC39A13Q96H72 371 aa16.99■□□□□ 0.31
SF3A1-204ENST00000447376 C11orf70Q9BRQ4 267 aa16.99■□□□□ 0.31
SF3A1-204ENST00000447376 ADAM22Q9P0K1 906 aa16.99■□□□□ 0.31
SF3A1-204ENST00000447376 SLC27A6Q9Y2P4 619 aa16.99■□□□□ 0.31
SF3A1-204ENST00000447376 CACNA1IQ9P0X4 2223 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 MYOFQ9NZM1 2061 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 CCDC163A0A0D9SF12 145 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 KCNU1A8MYU2 1149 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 F5H5T6 163 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 NPC1O15118 1278 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 TBL1XO60907 577 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 GYPCP04921 128 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 CHRNB2P17787 502 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 MMP8P22894 467 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 CASP14P31944 242 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 PRKCIP41743 596 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 MRE11P49959 708 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 CENPCQ03188 943 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 DEUP1Q05D60 604 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 EIF4HQ15056 248 aaKnown RBP16.98■□□□□ 0.31
SF3A1-204ENST00000447376 CLEC16AQ2KHT3 1053 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 RABGAP1LQ5R372 815 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 RFWD3Q6PCD5 774 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 VPS36Q86VN1 386 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 CHPFQ8IZ52 775 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 ALLCQ8N6M5 410 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 SLC30A5Q8TAD4 765 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 WFIKKN2Q8TEU8 576 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 ZNHIT6Q9NWK9 470 aaKnown RBP16.98■□□□□ 0.31
SF3A1-204ENST00000447376 FBXO10Q9UK96 956 aa16.98■□□□□ 0.31
SF3A1-204ENST00000447376 FAM170AA1A519 330 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 K7ESF4 209 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 TIMM44O43615 452 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 GFRA3O60609 400 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 IGLV3-25P01717 112 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 NTSR1P30989 418 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 KIR2DL1P43626 348 aaPredicted RBP16.97■□□□□ 0.31
SF3A1-204ENST00000447376 FNTBP49356 437 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 SLC25A52Q3SY17 297 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 BRMS1LQ5PSV4 323 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 ACBD5Q5T8D3 534 aaPredicted RBP16.97■□□□□ 0.31
SF3A1-204ENST00000447376 PIK3R6Q5UE93 754 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 TTC39BQ5VTQ0 682 aaPredicted RBP16.97■□□□□ 0.31
SF3A1-204ENST00000447376 CEP68Q76N32 757 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 ALYREFQ86V81 257 aaKnown RBP16.97■□□□□ 0.31
SF3A1-204ENST00000447376 WDR5BQ86VZ2 330 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 MFN1Q8IWA4 741 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 IL17RCQ8NAC3 791 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 NELL1Q92832 810 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 MRFAP1L1Q96HT8 127 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 HHIPQ96QV1 700 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 PHOX2BQ99453 314 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 HINFPQ9BQA5 517 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 SELENOOQ9BVL4 669 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 CIPCQ9C0C6 399 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 HAUS4Q9H6D7 363 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 WDCPQ9H6R7 721 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 STIM2Q9P246 746 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 BCCIPQ9P287 314 aaKnown RBP eCLIP16.97■□□□□ 0.31
SF3A1-204ENST00000447376 STARD13Q9Y3M8 1113 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 CACNA1HO95180 2353 aa16.97■□□□□ 0.31
SF3A1-204ENST00000447376 TRIM24O15164 1050 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 AXIN1O15169 862 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 MOCS3O95396 460 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 SERPING1P05155 500 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 CISD3P0C7P0 127 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 UNGP13051 313 aaPredicted RBP16.96■□□□□ 0.31
SF3A1-204ENST00000447376 TDGF1P13385 188 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 HOXB2P14652 356 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 TACR2P21452 398 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 HOXD9P28356 352 aaPredicted RBP16.96■□□□□ 0.31
SF3A1-204ENST00000447376 SDC4P31431 198 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 ZNF75DP51815 510 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 MESP2Q0VG99 397 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 CDH18Q13634 790 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 CRY1Q16526 586 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 C2CD6Q53TS8 623 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 TDRD12Q587J7 1177 aaKnown RBP16.96■□□□□ 0.31
SF3A1-204ENST00000447376 FAM133BQ5BKY9 247 aaKnown RBP16.96■□□□□ 0.31
SF3A1-204ENST00000447376 RAP1GAP2Q684P5 730 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 ARCQ7LC44 396 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 TMC6Q7Z403 805 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 LGI2Q8N0V4 545 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 OR8K1Q8NGG5 319 aa16.96■□□□□ 0.31
SF3A1-204ENST00000447376 METTL5Q9NRN9 209 aaKnown RBP16.96■□□□□ 0.31
SF3A1-204ENST00000447376 GOLGA6L7A0A1B0GV03 622 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 H0Y626 953 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 GFRA2O00451 464 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 LILRB5O75023 590 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 ATP5BP06576 529 aaKnown RBP16.95■□□□□ 0.3
SF3A1-204ENST00000447376 KRT3P12035 628 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 SLC6A4P31645 630 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 C1QBPQ07021 282 aaKnown RBP16.95■□□□□ 0.3
SF3A1-204ENST00000447376 SIM2Q14190 667 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-204ENST00000447376 STARD3Q14849 445 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 MS4A13Q5J8X5 152 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 EMC10Q5UCC4 262 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PRR23BQ6ZRT6 265 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PHF13Q86YI8 300 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-204ENST00000447376 CNGA4Q8IV77 575 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms