RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZNF419Q96HQ0 510 aaPredicted RBP21.58■■□□□ 1.05
SDC1-205ENST00000447124 LMLNQ96KR4 655 aa21.58■■□□□ 1.05
SDC1-205ENST00000447124 PRDM16Q9HAZ2 1276 aa21.58■■□□□ 1.05
SDC1-205ENST00000447124 FSCN3Q9NQT6 498 aa21.58■■□□□ 1.05
SDC1-205ENST00000447124 ITM2CQ9NQX7 267 aa21.58■■□□□ 1.05
SDC1-205ENST00000447124 ABCB8Q9NUT2 735 aa21.58■■□□□ 1.05
SDC1-205ENST00000447124 APEX2Q9UBZ4 518 aa21.58■■□□□ 1.05
SDC1-205ENST00000447124 TNRC6BQ9UPQ9 1833 aaKnown RBP21.57■■□□□ 1.04
SDC1-205ENST00000447124 KCNJ18B7U540 433 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 TBL1XO60907 577 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 KCNK5O95279 499 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 HLA-EP13747 358 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 KCNA4P22459 653 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 SLC11A2P49281 568 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 COPAP53621 1224 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 STARD3Q14849 445 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 TAF5Q15542 800 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 DPCR1Q3MIW9 517 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 CHST9Q7L1S5 443 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 BEND5Q7L4P6 421 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 TAC4Q86UU9 113 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 THAP9Q9H5L6 903 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 TMEM9BQ9NQ34 198 aa21.57■■□□□ 1.04
SDC1-205ENST00000447124 XPO7Q9UIA9 1087 aaKnown RBP21.57■■□□□ 1.04
SDC1-205ENST00000447124 ACACBO00763 2458 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 PABPC1P11940 636 aaKnown RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 CD70P32970 193 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 PITX1P78337 314 aaPredicted RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 PTPRNQ16849 979 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 MPP7Q5T2T1 576 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 WFIKKN2Q8TEU8 576 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 FAM81BQ96LP2 452 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 PRICKLE1Q96MT3 831 aaPredicted RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 IRX2Q9BZI1 471 aaPredicted RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 NUCKS1Q9H1E3 243 aaKnown RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 TMEM245Q9H330 911 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 WSB2Q9NYS7 404 aaPredicted RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 STIM2Q9P246 746 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 USP36Q9P275 1121 aaKnown RBP21.56■■□□□ 1.04
SDC1-205ENST00000447124 GGA2Q9UJY4 613 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 TLR6Q9Y2C9 796 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 CEP192Q8TEP8 1941 aa21.56■■□□□ 1.04
SDC1-205ENST00000447124 FOXN3O00409 490 aaPredicted RBP21.55■■□□□ 1.04
SDC1-205ENST00000447124 GIPC1O14908 333 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 SART1O43290 800 aaKnown RBP21.55■■□□□ 1.04
SDC1-205ENST00000447124 SYNCRIPO60506 623 aaKnown RBP21.55■■□□□ 1.04
SDC1-205ENST00000447124 EPHX1P07099 455 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 CLCN1P35523 988 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 RPS24P62847 133 aaKnown RBP21.55■■□□□ 1.04
SDC1-205ENST00000447124 PDCLQ13371 301 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 NNTQ13423 1086 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 EIF4EBP2Q13542 120 aaPredicted RBP21.55■■□□□ 1.04
SDC1-205ENST00000447124 MAN2A1Q16706 1144 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 DUOXA1Q1HG43 343 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 MIIPQ5JXC2 388 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 MBLAC2Q68D91 279 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 SERPINA13PQ6UXR4 307 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 ZNF366Q8N895 744 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 SIPA1Q96FS4 1042 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 HSPA12BQ96MM6 686 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 CNTNAP3BQ96NU0 1288 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 SERPINB11Q96P15 392 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 NUSAP1Q9BXS6 441 aaKnown RBP21.55■■□□□ 1.04
SDC1-205ENST00000447124 CNTNAP3Q9BZ76 1288 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 DNAJC12Q9UKB3 198 aa21.55■■□□□ 1.04
SDC1-205ENST00000447124 IRAK2O43187 625 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 IGLV3-25P01717 112 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 ENGP17813 658 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 MAOBP27338 520 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 ERCC5P28715 1186 aaPredicted RBP21.54■■□□□ 1.04
SDC1-205ENST00000447124 CD6P30203 668 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 YWHAZP63104 245 aaKnown RBP21.54■■□□□ 1.04
SDC1-205ENST00000447124 TPD52L1Q16890 204 aaPredicted RBP21.54■■□□□ 1.04
SDC1-205ENST00000447124 HSP90AA4PQ58FG1 418 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 ZC3H12AQ5D1E8 599 aaKnown RBP21.54■■□□□ 1.04
SDC1-205ENST00000447124 DAB2IPQ5VWQ8 1189 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 TOE1Q96GM8 510 aaKnown RBP21.54■■□□□ 1.04
SDC1-205ENST00000447124 CPXM1Q96SM3 734 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 POPDC2Q9HBU9 364 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 CAPN10Q9HC96 672 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 LMBRD1Q9NUN5 540 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 INTS6Q9UL03 887 aaKnown RBP21.54■■□□□ 1.04
SDC1-205ENST00000447124 SLC6A14Q9UN76 642 aa21.54■■□□□ 1.04
SDC1-205ENST00000447124 PCNX2A6NKB5 2137 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 CKAP5Q14008 2032 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 CAPN9O14815 690 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 NDUFS2O75306 463 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 TRUB2O95900 331 aaKnown RBP21.53■■□□□ 1.04
SDC1-205ENST00000447124 CFIP05156 583 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 PNMA6AP0CW24 399 aaPredicted RBP21.53■■□□□ 1.04
SDC1-205ENST00000447124 HOXD12P35452 270 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 DPP6P42658 865 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 TPMTP51580 245 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 ARID5AQ03989 594 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 KCNMA1Q12791 1236 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 LMAN2Q12907 356 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 CAMK2GQ13555 558 aaPredicted RBP21.53■■□□□ 1.04
SDC1-205ENST00000447124 E2F5Q15329 346 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 UAP1L1Q3KQV9 507 aa21.53■■□□□ 1.04
SDC1-205ENST00000447124 VWA3BQ502W6 1294 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms