RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NT5DC4Q86YG4 428 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SCUBE1Q8IWY4 988 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SLC35F5Q8WV83 523 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 SIKE1Q9BRV8 207 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 C11orf84Q9BUA3 381 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 GCOM2Q9BZD3 368 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 THAP1Q9NVV9 213 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 ANGPTL2Q9UKU9 493 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 WASF2Q9Y6W5 498 aa16.91■□□□□ 0.3
CLCNKA-203ENST00000439316 DNAH12Q6ZR08 3092 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 HTTP42858 3142 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 DYNC1LI2O43237 492 aaPredicted RBP16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 GSRP00390 522 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 MMP3P08254 477 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 KITP10721 976 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 NR2C2P49116 596 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 IGBP1P78318 339 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 RCN2Q14257 317 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 NBPF20Q3BBV1 942 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 MDH1BQ5I0G3 518 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 ZDHHC17Q8IUH5 632 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 ULK2Q8IYT8 1036 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 PPFIBP2Q8ND30 876 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 UCMAQ8WVF2 138 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 LENG1Q96BZ8 264 aaPredicted RBP16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 C1orf21Q9H246 121 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 KRT82Q9NSB4 513 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 HESX1Q9UBX0 185 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 GTF2IRD1Q9UHL9 959 aa16.9■□□□□ 0.3
CLCNKA-203ENST00000439316 SDR42E2A6NKP2 422 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 H3BRB1 525 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 MAP3K7O43318 606 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 CIB2O75838 187 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 ALDH1A2O94788 518 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 TOP3BO95985 862 aaKnown RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 INSRRP14616 1297 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 TFE3P19532 575 aaPredicted RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 SP100P23497 879 aaPredicted RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 GRIA1P42261 906 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 MBLAC2Q68D91 279 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 RIPOR1Q6ZS17 1223 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 SCUBE3Q8IX30 993 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 ACMSDQ8TDX5 336 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 PPP1R16BQ96T49 567 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 LBHD1Q9BQE6 289 aaPredicted RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 MRPL45Q9BRJ2 306 aaKnown RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 YIPF3Q9GZM5 350 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 TUT1Q9H6E5 874 aaKnown RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 MTMR10Q9NXD2 777 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 SORCS3Q9UPU3 1222 aa16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 GNEQ9Y223 722 aaKnown RBP16.89■□□□□ 0.3
CLCNKA-203ENST00000439316 CITO14578 2027 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 AOC1P19801 751 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 ALDH18A1P54886 795 aaKnown RBP16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 FCGRTP55899 365 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 ACTR3P61158 418 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 KDSRQ06136 332 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 NIPAL4Q0D2K0 466 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 DGKDQ16760 1214 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 KCNT2Q6UVM3 1135 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 ZCCHC23Q6ZST2 131 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 ACOT1Q86TX2 421 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 MYLK4Q86YV6 388 aaPredicted RBP16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 KBTBD2Q8IY47 623 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 CENPIQ92674 756 aaPredicted RBP16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 PANX3Q96QZ0 392 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 KCTD15Q96SI1 283 aaPredicted RBP16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 EBF4Q9BQW3 602 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 DHX35Q9H5Z1 703 aaKnown RBP16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 EMCNQ9ULC0 261 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 NME7Q9Y5B8 376 aa16.89■□□□□ 0.29
CLCNKA-203ENST00000439316 A6NJR5 290 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 PRR5-ARHGAP8B1AHC4 643 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 UPP2O95045 317 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 IGHA2P01877 340 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 MLNP12872 115 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 HOXD8P13378 290 aaPredicted RBP16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 SNX16P57768 344 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 MXRA7P84157 204 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 ARHGAP8P85298 464 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 TUBB3Q13509 450 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 IRF5Q13568 498 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 FASTKD1Q53R41 847 aaKnown RBP16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 KIF12Q96FN5 646 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 ZNF778Q96MU6 729 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 CSPG4P5Q96PW8 444 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 ZNF184Q99676 751 aaPredicted RBP16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 B3GNT5Q9BYG0 378 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 VCXQ9H320 206 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 STN1Q9H668 368 aaKnown RBP16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 CREBZFQ9NS37 354 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 FAM49BQ9NUQ9 324 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 SLC7A8Q9UHI5 535 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 AP4E1Q9UPM8 1137 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 TSPAN1O60635 241 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 FGF3P11487 239 aaPredicted RBP16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 ANPEPP15144 967 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 VAV1P15498 845 aa16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 UBAP2LQ14157 1087 aaKnown RBP16.88■□□□□ 0.29
CLCNKA-203ENST00000439316 TEDDM1Q5T9Z0 273 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms