RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 MECRQ9BV79 373 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 NME7Q9Y5B8 376 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 H3BRB1 525 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 PIRO00625 290 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 XPO1O14980 1071 aaKnown RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 UGT1A9O60656 530 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 PRDX6P30041 224 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 GARSP41250 739 aaKnown RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 MAGEA12P43365 314 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 PAFAH1B3Q15102 231 aaKnown RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 GRIK4Q16099 956 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 SOWAHAQ2M3V2 549 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 FASTKD1Q53R41 847 aaKnown RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 MROH9Q5TGP6 573 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 TMCO4Q5TGY1 634 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 C9orf57Q5W0N0 161 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 NOTUMQ6P988 496 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 MYLK4Q86YV6 388 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 RBM15BQ8NDT2 890 aaKnown RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 ZBTB10Q96DT7 871 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 SLC9A7Q96T83 725 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 BRD8Q9H0E9 1235 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 TUT1Q9H6E5 874 aaKnown RBP14.07□□□□□ -0.16
COL6A3-207ENST00000433762 UGT1A7Q9HAW7 530 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 UGT1A10Q9HAW8 530 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 UGT1A8Q9HAW9 530 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 FAM49BQ9NUQ9 324 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 SOX13Q9UN79 622 aa14.07□□□□□ -0.16
COL6A3-207ENST00000433762 PIK3R2O00459 728 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 TBX10O75333 385 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 KRT36O76013 467 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 ZNF135P52742 658 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-207ENST00000433762 CCDC153Q494R4 210 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 XKR4Q5GH76 650 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 TEDDM1Q5T9Z0 273 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 GRTP1Q5TC63 336 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 CES4AQ5XG92 561 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 TMEM130Q8N3G9 435 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 MPP5Q8N3R9 675 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 OR6B3Q8NGW1 331 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 SPDL1Q96EA4 605 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 TNIP3Q96KP6 325 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 CPNE1Q99829 537 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 ADAMTS10Q9H324 1103 aa14.06□□□□□ -0.16
COL6A3-207ENST00000433762 DDX43Q9NXZ2 648 aaKnown RBP14.06□□□□□ -0.16
COL6A3-207ENST00000433762 ERI2A8K979 691 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 MAP3K7O43318 606 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 H2AFYO75367 372 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 ALDOAP04075 364 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 ENO1P06733 434 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 FGF3P11487 239 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 VAV1P15498 845 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 HOXA11P31270 313 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 TUBB3Q13509 450 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 FBXO47Q5MNV8 452 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 RABGAP1LQ5R372 815 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 MARCH8Q5T0T0 291 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 PDZD4Q76G19 769 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 COLGALT1Q8NBJ5 622 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 PPP1R14CQ8TAE6 165 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 PPP4R1Q8TF05 950 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 WDR60Q8WVS4 1066 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 ARNTL2Q8WYA1 636 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 KCTD13Q8WZ19 329 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 NR1H4Q96RI1 486 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 KATNBL1Q9H079 304 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 XPNPEP3Q9NQH7 507 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 EMCNQ9ULC0 261 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 CYB561D2O14569 222 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 NCAM2O15394 837 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 POLBP06746 335 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 KCNE1P15382 129 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 GP5P40197 560 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 HARS2P49590 506 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 HK2P52789 917 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 AP2B1P63010 937 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 INTS6LQ5JSJ4 861 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 SYCP2LQ5T4T6 812 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 DPY19L2Q6NUT2 758 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 ULK2Q8IYT8 1036 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 OR6Y1Q8NGX8 325 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 KBTBD7Q8WVZ9 684 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 ZMAT2Q96NC0 199 aaKnown RBP14.05□□□□□ -0.16
COL6A3-207ENST00000433762 B3GNT5Q9BYG0 378 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 ARMCX1Q9P291 453 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 SLC45A1Q9Y2W3 748 aa14.05□□□□□ -0.16
COL6A3-207ENST00000433762 WDR27A2RRH5 827 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 MTSS1O43312 755 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 STRNO43815 780 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 PROCP04070 461 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 ITGA2BP08514 1039 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 TFE3P19532 575 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-207ENST00000433762 MX2P20592 715 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 PAX7P23759 505 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 DNAJB2P25686 324 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 NOS2P35228 1153 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 SLC1A6P48664 564 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 IRX1P78414 480 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-207ENST00000433762 IRF5Q13568 498 aa14.04□□□□□ -0.16
COL6A3-207ENST00000433762 THOC5Q13769 683 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms