RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 COMMD8Q9NX08 183 aa3.84□□□□□ -1.8
RTN4-208ENST00000404909 SLC12A6Q9UHW9 1150 aa3.84□□□□□ -1.8
RTN4-208ENST00000404909 DNMT3LQ9UJW3 386 aa3.84□□□□□ -1.8
RTN4-208ENST00000404909 TLR6Q9Y2C9 796 aa3.84□□□□□ -1.8
RTN4-208ENST00000404909 PCDHA11Q9Y5I1 949 aa3.84□□□□□ -1.8
RTN4-208ENST00000404909 IRAK3Q9Y616 596 aa3.84□□□□□ -1.8
RTN4-208ENST00000404909 TNRC18O15417 2968 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 REV3LO60673 3130 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ZNF638Q14966 1978 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 KCNU1A8MYU2 1149 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 C5orf67F2Z3F1 127 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ERLIN1O75477 346 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ZDHHC11BP0C7U3 371 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ZSCAN5DPP0CG00 497 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SLC2A3P11169 496 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 EPCAMP16422 314 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ERCC2P18074 760 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MCM3P25205 808 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 PTGIRP43119 386 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TNNT3P45378 269 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 NUMBP49757 651 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CLCN4P51793 760 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 NRLP54845 237 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 AIF1P55008 147 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 PLTPP55058 493 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CYP4F8P98187 520 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SCAPQ12770 1279 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 PPP2R5DQ14738 602 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 BRMS1LQ5PSV4 323 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TXNDC8Q6A555 127 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SLC9A4Q6AI14 798 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 WDR93Q6P2C0 686 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 LILRA6Q6PI73 481 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TMCO3Q6UWJ1 677 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CCNI2Q6ZMN8 369 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 TADA2BQ86TJ2 420 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CCDC89Q8N998 374 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CCNYQ8ND76 341 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MYRFLQ96LU7 910 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CEP295NLQ96MC4 621 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RUNDC3BQ96NL0 473 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GDF15Q99988 308 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RNF38Q9H0F5 515 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 HCFC1R1Q9NWW0 138 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MPP6Q9NZW5 540 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 UXTQ9UBK9 157 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 VANGL2Q9ULK5 521 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 DOCK6Q96HP0 2047 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MYO16Q9Y6X6 1858 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 KIAA1671Q9BY89 1806 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 A0A1W2PRU2 124 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CCDC151A5D8V7 595 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 FAM187AA6NFU0 413 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 H3BNC9 293 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RFXAPO00287 272 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 KRT14P02533 472 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CKMP06732 381 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TUBBP07437 444 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MBL2P11226 248 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 H2AFXP16104 143 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 ZFXP17010 805 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 TGM2P21980 687 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TUBP50607 506 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GDF10P55107 478 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ERVK-21P61565 698 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SLC10A2Q12908 348 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 EIF4EBP2Q13542 120 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 BRD3Q15059 726 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TRIP4Q15650 581 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 PIK3R6Q5UE93 754 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RAP1GAP2Q684P5 730 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 NCBP2-AS2Q69YL0 99 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MSANTD2Q6P1R3 559 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GAREM2Q75VX8 874 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TFAP2DQ7Z6R9 452 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TP53INP2Q8IXH6 220 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ARL14EPQ8N8R7 260 aaPredicted RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 MAB21L3Q8N8X9 362 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GLIS1Q8NBF1 620 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SLC35B2Q8TB61 432 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 FAF2Q96CS3 445 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 CELF6Q96J87 481 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 CDK5RAP1Q96SZ6 601 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 LGMNQ99538 433 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 IGFLR1Q9H665 355 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ARFGAP3Q9NP61 516 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GDF3Q9NR23 364 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ASAH2Q9NR71 780 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 ARHGEF38Q9NXL2 777 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 DTLQ9NZJ0 730 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 SEPT10Q9P0V9 454 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 RAB21Q9UL25 225 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MAFFQ9ULX9 164 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 HS3ST4Q9Y661 456 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 BRWD1Q9NSI6 2320 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 PLXNA4Q9HCM2 1894 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 GOLGA6L7A0A1B0GV03 622 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 TRDMT1O14717 391 aaKnown RBP3.83□□□□□ -1.8
RTN4-208ENST00000404909 KCNN4O15554 427 aa3.83□□□□□ -1.8
RTN4-208ENST00000404909 MFSD11O43934 449 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms